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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0042101 through 18771 annotations produced 1 hits


Annotation Number : CG18744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042101
Gbrowse : chr3R:3622878-3624535 (-) // 100.0 //
Probeset : 1641660_at
Accessions : protein= NP_652647;, nucleotide= NM_144390;
FlyMine data for FBgn0042101.
VDRC has 6 RNAi stocks for FBgn0042101 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye0 00 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland1 00 of 4 0.10Down
Crop1 00 of 4 0.10Down
Midgut171 74 of 412.20Up
Tubule25 20 of 4 1.80Up
Hindgut16 20 of 4 1.20None
Heart0 00 of 4 0.05Down
Fat body1 00 of 4 0.12Down
Ovary3 10 of 4 0.20Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.13Down
Mated spermatheca2 00 of 4 0.14Down
Adult carcass1 00 of 4 0.10Down
Larval CNS1 00 of 4 0.09Down
Larval Salivary gland1 00 of 4 0.08Down
Larval midgut237 134 of 416.81Up
Larval tubule13 10 of 4 0.90None
Larval hindgut19 20 of 4 1.37None
Larval fat body9 40 of 4 0.70None
Larval trachea1 20 of 4 0.13Down
Larval carcass1 00 of 4 0.09Down
S2 cells (growing)2 10 of 4 0.15Down
Whole fly14 20 of 4

Looking for FBgn0042101. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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