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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0042103 through 18771 annotations produced 1 hits


Annotation Number : CG18746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042103
Gbrowse : chr3R:3614000-3615904 (-) // 100.0 //
Probeset : 1632918_at
Accessions : protein= NP_652649;, nucleotide= NM_144392;
FlyMine data for FBgn0042103.
BDGP gene expression has embryonic in situ data for CG18746: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0042103 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.40Down
Head3 10 of 4 0.20Down
Eye1 00 of 4 0.13Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland8 20 of 4 0.74None
Crop4 10 of 4 0.40Down
Midgut109 34 of 4 9.10Up
Tubule36 93 of 4 3.10Up
Hindgut15 14 of 4 1.30None
Heart0 00 of 4 0.06Down
Fat body4 40 of 4 0.40None
Ovary1 00 of 4 0.20Down
Testis2 00 of 4 0.20Down
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.44None
Mated spermatheca2 10 of 4 0.22Down
Adult carcass8 20 of 4 0.70None
Larval CNS0 00 of 4 0.07Down
Larval Salivary gland4 20 of 4 0.37None
Larval midgut128 64 of 410.71Up
Larval tubule122 74 of 410.20Up
Larval hindgut36 24 of 4 3.06Up
Larval fat body5 20 of 4 0.50None
Larval trachea2 20 of 4 0.22Down
Larval carcass3 10 of 4 0.29Down
S2 cells (growing)1 00 of 4 0.13Down
Whole fly12 23 of 4

Looking for FBgn0042103. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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