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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042105 through 18771 annotations produced 1 hits



(CG18748):

Annotation Number : CG18748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042105
Gbrowse : chr3R:3612302-3613502 (-) // 100.0 //
Probeset : 1626066_at
Accessions : protein= NP_001097702; /// NP_001097703;, nucleotide= NM_001104232; /// NM_001104233;
FlyMine data for FBgn0042105.
VDRC has 2 RNAi stocks for FBgn0042105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye4 10 of 4 0.12Down
Thoracicoabdominal ganglion5 10 of 4 0.20Down
Salivary gland3 10 of 4 0.10Down
Crop3 20 of 4 0.10Down
Midgut723 194 of 421.00Up
Tubule18 21 of 4 0.50Down
Hindgut87 24 of 4 2.50Up
Heart5 00 of 4 0.15Down
Fat body3 30 of 4 0.11Down
Ovary2 10 of 4 0.10Down
Testis1 00 of 4 0.00Down
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.11Down
Mated spermatheca5 10 of 4 0.16Down
Adult carcass5 30 of 4 0.10Down
Larval CNS3 10 of 4 0.11Down
Larval Salivary gland2 00 of 4 0.06Down
Larval midgut250 224 of 4 7.25Up
Larval tubule14 30 of 4 0.40Down
Larval hindgut62 04 of 4 1.81Up
Larval fat body6 30 of 4 0.20Down
Larval trachea1 00 of 4 0.04Down
Larval carcass4 20 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.07Down
Whole fly34 53 of 4

Looking for FBgn0042105. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime