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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042111 through 18771 annotations produced 1 hits



(CG18766):

Annotation Number : CG18766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042111
Gbrowse : chr3R:23068055-23070951 (-) // 100.0 //
Probeset : 1625291_s_at
Accessions : protein= NP_652657; /// NP_733207;, nucleotide= NM_144400; /// NM_170328;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0042111.
BDGP gene expression has embryonic in situ data for CG18766: 40 pix of staining in 11 body parts.
BioGrid reports that CG18766 interacts with CG18766 CG7115 CG2009 CG2199 CG31232 CG8107 .
VDRC has 2 RNAi stocks for FBgn0042111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain271 ± 44 of 4 5.40Up
Head95 ± 14 of 4 1.90Up
Eye135 ± 34 of 4 2.69Up
Thoracicoabdominal ganglion261 ± 54 of 4 5.20Up
Salivary gland210 ± 154 of 4 4.15Up
Crop125 ± 74 of 4 2.50Up
Midgut74 ± 14 of 4 1.50Up
Tubule187 ± 54 of 4 3.70Up
Hindgut122 ± 24 of 4 2.40Up
Heart70 ± 44 of 4 1.40Up
Fat body43 ± 94 of 4 0.86None
Ovary49 ± 34 of 4 1.00None
Testis35 ± 44 of 4 0.70Down
Male accessory glands139 ± 54 of 4 2.80Up
Virgin spermatheca98 ± 24 of 4 1.95Up
Mated spermatheca99 ± 54 of 4 1.97Up
Adult carcass72 ± 44 of 4 1.40Up
Larval CNS202 ± 84 of 4 4.00Up
Larval Salivary gland94 ± 54 of 4 1.86Up
Larval midgut69 ± 44 of 4 1.36Up
Larval tubule167 ± 54 of 4 3.30Up
Larval hindgut104 ± 24 of 4 2.07Up
Larval fat body60 ± 44 of 4 1.20None
Larval trachea123 ± 24 of 4 2.44Up
Larval carcass69 ± 34 of 4 1.38Up
S2 cells (growing)135 ± 14 of 4 2.67Up
Whole fly50 ± 24 of 4

Looking for FBgn0042111. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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