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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042112 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L36 (mRpL36):

Annotation Number : CG18767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042112
Gbrowse : chr3L:8117683-8118213 (-) // 100.0 //
Probeset : 1624765_at
Accessions : protein= NP_652658;, nucleotide= NM_144401;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0042112.
VDRC has 3 RNAi stocks for FBgn0042112 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 54 of 4 1.10None
Head141 114 of 4 0.80None
Eye137 44 of 4 0.76Down
Thoracicoabdominal ganglion180 34 of 4 1.00None
Salivary gland139 54 of 4 0.77None
Crop128 94 of 4 0.70Down
Midgut143 14 of 4 0.80None
Tubule130 44 of 4 0.70Down
Hindgut193 54 of 4 1.10None
Heart191 54 of 4 1.07None
Fat body147 54 of 4 0.82None
Ovary228 54 of 4 1.30Up
Testis142 24 of 4 0.80None
Male accessory glands102 34 of 4 0.60Down
Virgin spermatheca102 64 of 4 0.57Down
Mated spermatheca100 64 of 4 0.56Down
Adult carcass101 74 of 4 0.60Down
Larval CNS269 304 of 4 1.50Up
Larval Salivary gland194 124 of 4 1.08None
Larval midgut91 24 of 4 0.51Down
Larval tubule219 114 of 4 1.20None
Larval hindgut173 144 of 4 0.96None
Larval fat body111 74 of 4 0.60Down
Larval trachea210 194 of 4 1.17None
Larval carcass121 124 of 4 0.68Down
S2 cells (growing)214 134 of 4 1.19None
Whole fly179 134 of 4

Looking for FBgn0042112. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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