Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042118 through 18771 annotations produced 1 hits



Cuticular protein 65Ax1 /// CG18777 (Cpr65Ax1 /// Cpr65Ax2):

Annotation Number : CG18777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042118 /// FBgn0086900
Gbrowse : chr3L:6143499-6143952 (-) // 100.0 // /// chr3L:6140628-6141081 (-) // 100.0 //
Probeset : 1631558_at
Accessions : protein= NP_001097523; /// NP_652660;, nucleotide= NM_001104053; /// NM_144403;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0042118 /// FBgn0086900.
BioGrid reports that CG18777 interacts with CG6667 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00None
Head3 ± 10 of 4 0.10None
Eye4 ± 10 of 4 0.08None
Thoracicoabdominal ganglion5 ± 00 of 4 0.10None
Salivary gland6 ± 20 of 4 0.11None
Crop5 ± 10 of 4 0.10None
Midgut3 ± 00 of 4 0.10None
Tubule3 ± 10 of 4 0.10Down
Hindgut6 ± 21 of 4 0.10None
Heart4 ± 11 of 4 0.07None
Fat body8 ± 00 of 4 0.14None
Ovary2 ± 00 of 4 0.00None
Testis1 ± 00 of 4 0.00None
Male accessory glands7 ± 20 of 4 0.10None
Virgin spermatheca5 ± 10 of 4 0.09None
Mated spermatheca6 ± 10 of 4 0.10None
Adult carcass4 ± 10 of 4 0.10None
Larval CNS5 ± 20 of 4 0.08None
Larval Salivary gland3 ± 00 of 4 0.07None
Larval midgut4 ± 10 of 4 0.07None
Larval tubule3 ± 10 of 4 0.10None
Larval hindgut519 ± 1064 of 4 8.79Up
Larval fat body7 ± 20 of 4 0.10None
Larval trachea381 ± 2464 of 4 6.44None
Larval carcass3405 ± 4604 of 457.60Up
S2 cells (growing)5 ± 00 of 4 0.08None
Whole fly59 ± 292 of 4

Looking for FBgn0042118. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime