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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0042126 through 18771 annotations produced 1 hits


Annotation Number : CG18788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042126
Gbrowse : chr2L:12034189-12036137 (+) // 100.0 //
Probeset : 1627670_at
Accessions : protein= NP_652665;, nucleotide= NM_144408;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0042126.
Homophila reports that CG18788 is a close match (2e-28) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
BioGrid reports that CG18788 interacts with CG6905 .
VDRC has 2 RNAi stocks for FBgn0042126 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30Down
Head3 00 of 4 0.60Down
Eye3 10 of 4 0.53None
Thoracicoabdominal ganglion3 10 of 4 0.50Down
Salivary gland18 32 of 4 2.64Up
Crop5 10 of 4 0.70None
Midgut25 24 of 4 3.60Up
Tubule15 12 of 4 2.20Up
Hindgut14 14 of 4 2.10Up
Heart4 00 of 4 0.58Down
Fat body4 30 of 4 0.65None
Ovary2 00 of 4 0.30Down
Testis37 34 of 4 5.40Up
Male accessory glands7 21 of 4 1.10None
Virgin spermatheca4 10 of 4 0.63None
Mated spermatheca2 00 of 4 0.42Down
Adult carcass3 00 of 4 0.60Down
Larval CNS3 00 of 4 0.49Down
Larval Salivary gland7 20 of 4 1.06None
Larval midgut13 13 of 4 1.89Up
Larval tubule3 10 of 4 0.40None
Larval hindgut8 22 of 4 1.17None
Larval fat body11 42 of 4 1.70None
Larval trachea6 41 of 4 0.91None
Larval carcass7 12 of 4 1.03None
S2 cells (growing)2 10 of 4 0.37Down
Whole fly7 02 of 4

Looking for FBgn0042126. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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