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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0042129 through 18771 annotations produced 1 hits


Annotation Number : CG18806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042129
Gbrowse : chr2L:19965817-19966297 (-) // 100.0 //
Probeset : 1635361_at
Accessions : protein= NP_652666;, nucleotide= NM_144409;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0042129.
BioGrid reports that CG18806 interacts with CG4755 CG5441 CG2109 CG2855 CG33135 CG3917 CG40127 CG4086 CG5005 CG5374 CG5376 CG5676 CG5820 CG5938 CG6253 CG6398 CG6998 CG7386 CG8749 .
VDRC has 1 RNAi stocks for FBgn0042129 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head1276 784 of 413.10Up
Eye120 624 of 4 1.24None
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland12 20 of 4 0.12Down
Crop80 54 of 4 0.80None
Midgut2 10 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut4 11 of 4 0.00Down
Heart25 14 of 4 0.26Down
Fat body47 54 of 4 0.48Down
Ovary2 10 of 4 0.00Down
Testis8 13 of 4 0.10Down
Male accessory glands2 20 of 4 0.00Down
Virgin spermatheca25 04 of 4 0.26Down
Mated spermatheca31 24 of 4 0.32Down
Adult carcass198 134 of 4 2.00Up
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut2 00 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 10 of 4 0.02Down
Larval fat body2 10 of 4 0.00Down
Larval trachea2 10 of 4 0.03Down
Larval carcass2 10 of 4 0.03Down
S2 cells (growing)3 10 of 4 0.04Down
Whole fly97 44 of 4

Looking for FBgn0042129. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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