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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042133 through 18771 annotations produced 1 hits



(CG18810):

Annotation Number : CG18810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042133
Gbrowse : chr2L:20649021-20649939 (+) // 100.0 //
Probeset : 1635056_at
Accessions : protein= NP_652670;, nucleotide= NM_144413;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0042133.
BioGrid reports that CG18810 interacts with CG1906 CG3605 .
VDRC has 2 RNAi stocks for FBgn0042133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head6 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland11 ± 21 of 4 0.14Down
Crop2 ± 10 of 4 0.00Down
Midgut14 ± 03 of 4 0.20Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart6 ± 20 of 4 0.08Down
Fat body10 ± 10 of 4 0.12Down
Ovary1 ± 00 of 4 0.00Down
Testis779 ± 194 of 4 9.60Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 00 of 4 0.08Down
Adult carcass9 ± 30 of 4 0.10Down
Larval CNS5 ± 10 of 4 0.06Down
Larval Salivary gland9 ± 21 of 4 0.12Down
Larval midgut12 ± 31 of 4 0.15Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.08Down
Larval fat body109 ± 643 of 4 1.30None
Larval trachea6 ± 71 of 4 0.08Down
Larval carcass4 ± 10 of 4 0.05Down
S2 cells (growing)3 ± 10 of 4 0.04Down
Whole fly81 ± 64 of 4

Looking for FBgn0042133. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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