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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042134 through 18771 annotations produced 1 hits



dFMRP-associated protein (CG18811):

Annotation Number : CG18811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042134
Gbrowse : chr3L:18661418-18666289 (-) // 100.0 //
Probeset : 1625004_at
Accessions : protein= NP_652671;, nucleotide= NM_144414;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // inferred from electronic annota
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0042134.
BioGrid reports that CG18811 interacts with CG4194 .
VDRC has 4 RNAi stocks for FBgn0042134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 64 of 4 0.50Down
Head171 104 of 4 0.40Down
Eye195 74 of 4 0.42Down
Thoracicoabdominal ganglion212 34 of 4 0.50Down
Salivary gland327 254 of 4 0.71Down
Crop279 94 of 4 0.60Down
Midgut202 94 of 4 0.40Down
Tubule257 124 of 4 0.60Down
Hindgut208 74 of 4 0.50Down
Heart206 74 of 4 0.45Down
Fat body252 234 of 4 0.55Down
Ovary1080 134 of 4 2.30Up
Testis224 54 of 4 0.50Down
Male accessory glands618 284 of 4 1.30Up
Virgin spermatheca338 244 of 4 0.73Down
Mated spermatheca318 214 of 4 0.69Down
Adult carcass167 64 of 4 0.40Down
Larval CNS925 374 of 4 2.00Up
Larval Salivary gland698 264 of 4 1.51Up
Larval midgut446 244 of 4 0.96None
Larval tubule686 114 of 4 1.50Up
Larval hindgut507 94 of 4 1.10Up
Larval fat body469 214 of 4 1.00None
Larval trachea556 464 of 4 1.20Up
Larval carcass550 84 of 4 1.19Up
S2 cells (growing)671 44 of 4 1.45Up
Whole fly462 64 of 4

Looking for FBgn0042134. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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