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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042135 through 18771 annotations produced 1 hits



(CG18812):

Annotation Number : CG18812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042135
Gbrowse : chr2R:3605950-3623124 (-) // 100.0 //
Probeset : 1637352_a_at
Accessions : protein= NP_724597; /// NP_724598; /// NP_724599;, nucleotide= NM_165552; /// NM_165553; /// NM_165554;
FlyMine data for FBgn0042135.
Homophila reports that CG18812 is a close match (6e-11) to human gene ATCAY;CLAC;KIAA1872 (NP_149053), a gene associated with Ataxia, cerebellar, Cayman type, 601238 (3).
BioGrid reports that CG18812 interacts with CG5338 CG7285 CG9986 .
TRiP has 1 RNAi stocks for FBgn0042135 available for purchase.
VDRC has 3 RNAi stocks for FBgn0042135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain395 ± 174 of 4 1.00None
Head530 ± 354 of 4 1.30Up
Eye727 ± 184 of 4 1.82Up
Thoracicoabdominal ganglion331 ± 244 of 4 0.80None
Salivary gland1125 ± 164 of 4 2.82Up
Crop1669 ± 334 of 4 4.20Up
Midgut567 ± 154 of 4 1.40Up
Tubule1938 ± 2744 of 4 4.90Up
Hindgut908 ± 154 of 4 2.30Up
Heart508 ± 334 of 4 1.28Up
Fat body102 ± 264 of 4 0.26Down
Ovary518 ± 144 of 4 1.30Up
Testis136 ± 94 of 4 0.30Down
Male accessory glands299 ± 134 of 4 0.80Down
Virgin spermatheca73 ± 54 of 4 0.18Down
Mated spermatheca69 ± 204 of 4 0.17Down
Adult carcass370 ± 74 of 4 0.90None
Larval CNS119 ± 24 of 4 0.30Down
Larval Salivary gland575 ± 424 of 4 1.44Up
Larval midgut894 ± 244 of 4 2.24Up
Larval tubule1978 ± 624 of 4 5.00Up
Larval hindgut693 ± 354 of 4 1.74Up
Larval fat body186 ± 144 of 4 0.50Down
Larval trachea210 ± 254 of 4 0.53Down
Larval carcass558 ± 1674 of 4 1.40None
S2 cells (growing)304 ± 244 of 4 0.76Down
Whole fly399 ± 94 of 4

Looking for FBgn0042135. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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