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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042173 through 18771 annotations produced 1 hits



/// photolyase (CG18853 /// phr):

Annotation Number : CG11205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003082 /// FBgn0042173
Gbrowse : chr2R:3712996-3714825 (+) // 100.0 //
Probeset : 1636758_s_at
Accessions : protein= NP_523653; /// NP_724613; /// NP_724615;, nucleotide= NM_078929; /// NM_165564; /// NM_165566;
Interpro : 0003904 // deoxyribodipyrimidine photo-lyase activity // inferred from sequence or structural similarity /// 0003904 //
FlyMine data for FBgn0003082 /// FBgn0042173.
BioGrid reports that CG11205 interacts with CG9472 CG14487 CG2925 CG32632 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain372 94 of 4 1.50Up
Head212 164 of 4 0.90None
Eye201 114 of 4 0.83None
Thoracicoabdominal ganglion368 374 of 4 1.50Up
Salivary gland260 164 of 4 1.08None
Crop297 94 of 4 1.20Up
Midgut109 84 of 4 0.50Down
Tubule306 44 of 4 1.30Up
Hindgut191 84 of 4 0.80None
Heart243 64 of 4 1.01None
Fat body185 174 of 4 0.77Down
Ovary459 114 of 4 1.90Up
Testis116 24 of 4 0.50Down
Male accessory glands218 114 of 4 0.90None
Virgin spermatheca142 104 of 4 0.59Down
Mated spermatheca136 114 of 4 0.56Down
Adult carcass192 84 of 4 0.80None
Larval CNS438 304 of 4 1.81Up
Larval Salivary gland133 34 of 4 0.55Down
Larval midgut118 24 of 4 0.49Down
Larval tubule187 54 of 4 0.80None
Larval hindgut210 84 of 4 0.87None
Larval fat body97 114 of 4 0.40Down
Larval trachea376 174 of 4 1.56Up
Larval carcass286 144 of 4 1.19None
S2 cells (growing)902 224 of 4 3.73Up
Whole fly241 184 of 4

Looking for FBgn0042173. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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