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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042175 through 18771 annotations produced 1 hits



/// (CG18858 /// CG31683):

Annotation Number : CG31683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042175 /// FBgn0051683
Gbrowse : chr2L:20456850-20459090 (-) // 99.95 // /// chr2L:20447733-20449973 (-) // 99.95 //
Probeset : 1641570_s_at
Accessions : protein= NP_652700; /// NP_724265;, nucleotide= NM_144443; /// NM_165330;
Interpro : 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from electronic annotation /// 0004620 // p
FlyMine data for FBgn0042175 /// FBgn0051683.
Homophila reports that CG31683 is a close match (2e-61) to human gene LCAT (NP_000220), a gene associated with Fish-eye disease, 136120 (3);Norum disease, 245900 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 ± 124 of 4 1.30Up
Head298 ± 64 of 4 1.10Up
Eye335 ± 284 of 4 1.26None
Thoracicoabdominal ganglion466 ± 244 of 4 1.80Up
Salivary gland325 ± 114 of 4 1.22Up
Crop423 ± 314 of 4 1.60Up
Midgut463 ± 204 of 4 1.70Up
Tubule279 ± 134 of 4 1.10None
Hindgut310 ± 114 of 4 1.20Up
Heart769 ± 194 of 4 2.89Up
Fat body881 ± 1134 of 4 3.31Up
Ovary299 ± 84 of 4 1.10Up
Testis186 ± 54 of 4 0.70Down
Male accessory glands622 ± 364 of 4 2.30Up
Virgin spermatheca2571 ± 1424 of 4 9.66Up
Mated spermatheca1191 ± 624 of 4 4.48Up
Adult carcass476 ± 304 of 4 1.80Up
Larval CNS329 ± 174 of 4 1.24Up
Larval Salivary gland161 ± 84 of 4 0.61Down
Larval midgut971 ± 2034 of 4 3.65Up
Larval tubule417 ± 134 of 4 1.60Up
Larval hindgut345 ± 464 of 4 1.30None
Larval fat body1934 ± 1334 of 4 7.30Up
Larval trachea378 ± 484 of 4 1.42Up
Larval carcass321 ± 244 of 4 1.21None
S2 cells (growing)525 ± 24 of 4 1.98Up
Whole fly266 ± 74 of 4

Looking for FBgn0042175. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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