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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042178 through 18771 annotations produced 2 hits



/// (CG32164 /// CG32165):

Annotation Number : CG32164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042177
Gbrowse : chr3L:16596186-16601254 (+) // 100.0 // /// chr3L:16588525-16593567 (+) // 98.39 //
Probeset : 1625437_at
Accessions : protein= NP_730184;, nucleotide= NM_168677;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from e
FlyMine data for FBgn0042177.
BDGP gene expression has embryonic in situ data for CG32164: 4 pix of staining in 1 body parts.
BioGrid reports that CG32164 interacts with CG3427 .
TRiP has 5 RNAi stocks for FBgn0042177 available for purchase.
VDRC has 4 RNAi stocks for FBgn0042177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 184 of 4 0.50Down
Head302 244 of 4 0.40Down
Eye230 84 of 4 0.33Down
Thoracicoabdominal ganglion292 184 of 4 0.40Down
Salivary gland205 114 of 4 0.30Down
Crop436 194 of 4 0.60Down
Midgut270 94 of 4 0.40Down
Tubule223 74 of 4 0.30Down
Hindgut310 114 of 4 0.40Down
Heart182 124 of 4 0.26Down
Fat body509 754 of 4 0.74Down
Ovary1055 224 of 4 1.50Up
Testis1014 124 of 4 1.50Up
Male accessory glands627 204 of 4 0.90None
Virgin spermatheca828 424 of 4 1.20None
Mated spermatheca888 254 of 4 1.28Up
Adult carcass206 114 of 4 0.30Down
Larval CNS715 1024 of 4 1.03None
Larval Salivary gland800 1074 of 4 1.16None
Larval midgut383 104 of 4 0.55Down
Larval tubule341 194 of 4 0.50Down
Larval hindgut593 84 of 4 0.86None
Larval fat body375 604 of 4 0.50Down
Larval trachea448 314 of 4 0.65Down
Larval carcass702 784 of 4 1.01None
S2 cells (growing)401 254 of 4 0.58Down
Whole fly692 514 of 4



/// (CG32164 /// CG32165):

Annotation Number : CG32165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042177 /// FBgn0042178
Gbrowse : chr3L:16588518-16593267 (+) // 100.0 //
Probeset : 1633131_s_at
Accessions : protein= NP_730182; /// NP_730184;, nucleotide= NM_168676; /// NM_168677;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from e
FlyMine data for FBgn0042177 /// FBgn0042178.
BioGrid reports that CG32165 interacts with CG3427 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 44 of 4 0.50Down
Head135 54 of 4 0.40Down
Eye141 14 of 4 0.38Down
Thoracicoabdominal ganglion165 94 of 4 0.40Down
Salivary gland286 104 of 4 0.77Down
Crop187 54 of 4 0.50Down
Midgut137 84 of 4 0.40Down
Tubule83 64 of 4 0.20Down
Hindgut160 54 of 4 0.40Down
Heart109 64 of 4 0.29Down
Fat body229 64 of 4 0.62Down
Ovary523 114 of 4 1.40Up
Testis943 74 of 4 2.50Up
Male accessory glands360 204 of 4 1.00None
Virgin spermatheca93 34 of 4 0.25Down
Mated spermatheca102 54 of 4 0.28Down
Adult carcass162 44 of 4 0.40Down
Larval CNS284 114 of 4 0.77Down
Larval Salivary gland413 104 of 4 1.11None
Larval midgut112 24 of 4 0.30Down
Larval tubule149 84 of 4 0.40Down
Larval hindgut229 74 of 4 0.62Down
Larval fat body258 694 of 4 0.70None
Larval trachea310 94 of 4 0.83Down
Larval carcass298 304 of 4 0.80None
S2 cells (growing)546 104 of 4 1.47Up
Whole fly371 184 of 4

Looking for FBgn0042178. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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