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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042179 through 18771 annotations produced 1 hits



/// CG18869 (CG18869 /// DsimGD13807):

Annotation Number : CG18869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042179
Gbrowse : chr3L:4059805-4061923 (+) // 100.0 //
Probeset : 1635046_at
Accessions : protein= NP_652703;, nucleotide= NM_144446;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0042179.
Homophila reports that CG18869 is a close match (1e-12) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0042179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head5 10 of 4 0.10Down
Eye3 10 of 4 0.05Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland8 10 of 4 0.12Down
Crop10 00 of 4 0.20Down
Midgut187 114 of 4 2.80Up
Tubule7 20 of 4 0.10Down
Hindgut49 14 of 4 0.70Down
Heart2 10 of 4 0.03Down
Fat body5 40 of 4 0.09Down
Ovary1 10 of 4 0.00Down
Testis499 54 of 4 7.50Up
Male accessory glands10 10 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.08Down
Mated spermatheca7 20 of 4 0.11Down
Adult carcass9 30 of 4 0.10Down
Larval CNS3 10 of 4 0.06Down
Larval Salivary gland10 30 of 4 0.15Down
Larval midgut258 134 of 4 3.87Up
Larval tubule9 20 of 4 0.10Down
Larval hindgut60 24 of 4 0.90None
Larval fat body70 274 of 4 1.10None
Larval trachea6 51 of 4 0.10Down
Larval carcass7 20 of 4 0.11Down
S2 cells (growing)3 10 of 4 0.05Down
Whole fly66 24 of 4

Looking for FBgn0042179. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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