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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042182 through 18771 annotations produced 1 hits



/// (CG18749 /// CG33722):

Annotation Number : CG31188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042182 /// FBgn0064126
Gbrowse : chr3R:4069780-4073578 (+) // 100.0 //
Probeset : 1636894_s_at
Accessions : protein= NP_001027152; /// NP_001027153; /// NP_001027154;, nucleotide= NM_001031981; /// NM_001031982; /// NM_001031983;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0042182 /// FBgn0064126.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 24 of 4 1.20None
Head8 ± 10 of 4 0.20Down
Eye10 ± 12 of 4 0.32Down
Thoracicoabdominal ganglion31 ± 14 of 4 1.00None
Salivary gland7 ± 30 of 4 0.24Down
Crop8 ± 11 of 4 0.30Down
Midgut6 ± 10 of 4 0.20Down
Tubule4 ± 10 of 4 0.10Down
Hindgut8 ± 10 of 4 0.30Down
Heart9 ± 12 of 4 0.29Down
Fat body14 ± 20 of 4 0.43Down
Ovary1 ± 00 of 4 0.00Down
Testis24 ± 24 of 4 0.70None
Male accessory glands3523 ± 494 of 4108.40Up
Virgin spermatheca7 ± 10 of 4 0.24Down
Mated spermatheca9 ± 00 of 4 0.28Down
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS16 ± 34 of 4 0.50Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut7 ± 10 of 4 0.24Down
Larval tubule8 ± 20 of 4 0.30Down
Larval hindgut8 ± 10 of 4 0.26Down
Larval fat body9 ± 11 of 4 0.30Down
Larval trachea10 ± 34 of 4 0.32Down
Larval carcass5 ± 11 of 4 0.16Down
S2 cells (growing)21 ± 14 of 4 0.67Down
Whole fly32 ± 24 of 4

Looking for FBgn0042182. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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