FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0042630 through 18771 annotations produced 1 hits

sox-like (Sox21b):

Annotation Number : CG32139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042630
Gbrowse : chr3L:14105489-14124424 (-) // 99.74 //
Probeset : 1637750_at
Accessions : protein= NP_648695;, nucleotide= NM_140438;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0042630.
BDGP gene expression has embryonic in situ data for Sox21b: 48 pix of staining in 9 body parts.
Homophila reports that CG32139 is a close match (4e-19) to human gene SOX18;HLTS (NP_060889), a gene associated with Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3).
VDRC has 1 RNAi stocks for FBgn0042630 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	132 ± 7	4 of 4	18.60	Up
Head	23 ± 1	4 of 4	3.30	Up
Eye	5 ± 2	1 of 4	0.79	None
Thoracicoabdominal ganglion	24 ± 1	4 of 4	3.40	Up
Salivary gland	694 ± 31	4 of 4	97.40	Up
Crop	15 ± 1	4 of 4	2.20	Up
Midgut	4 ± 0	0 of 4	0.70	None
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	45 ± 2	4 of 4	6.40	Up
Heart	3 ± 1	0 of 4	0.42	None
Fat body	7 ± 3	3 of 4	1.04	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	22 ± 2	4 of 4	3.20	Up
Male accessory glands	4 ± 2	0 of 4	0.70	None
Virgin spermatheca	7 ± 0	4 of 4	1.07	None
Mated spermatheca	6 ± 0	1 of 4	0.88	None
Adult carcass	7 ± 2	0 of 4	1.00	None
Larval CNS	59 ± 10	4 of 4	8.41	Up
Larval Salivary gland	147 ± 15	4 of 4	20.66	Up
Larval midgut	2 ± 0	0 of 4	0.29	None
Larval tubule	2 ± 1	0 of 4	0.30	None
Larval hindgut	158 ± 2	4 of 4	22.22	Up
Larval fat body	7 ± 2	2 of 4	1.10	None
Larval trachea	2 ± 2	0 of 4	0.34	None
Larval carcass	14 ± 0	4 of 4	2.00	Up
S2 cells (growing)	1 ± 0	0 of 4	0.24	Down
Whole fly	7 ± 1	3 of 4

Looking for FBgn0042630. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720