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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042693 through 18771 annotations produced 2 hits



PP2A B' subunit (PP2A-B):

Annotation Number : CG7913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042693
Gbrowse : chr3R:13993450-14002963 (+) // 100.0 //
Probeset : 1640602_s_at
Accessions : protein= NP_001138070; /// NP_001138071; /// NP_001138072; /// NP_650681; /// NP_732293; /// NP_732294; /// NP_732295; /// NP_732296;, nucleotide= NM_001144598; /// NM_001144599; /// NM_001144600; /// NM_142424; /// NM_169787; /// NM_169788; /// NM_169789; /// NM_169790;
Pathway : 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008601 // protein phosphatase type 2A regulator activity
FlyMine data for FBgn0042693.
BDGP gene expression has embryonic in situ data for PP2A-B': 4 pix of staining in 1 body parts.
BioGrid reports that CG7913 interacts with CG8235 .
TRiP has 2 RNAi stocks for FBgn0042693 available for purchase.
VDRC has 3 RNAi stocks for FBgn0042693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 74 of 4 1.90Up
Head112 84 of 4 0.70Down
Eye138 14 of 4 0.86Down
Thoracicoabdominal ganglion189 174 of 4 1.20None
Salivary gland80 54 of 4 0.50Down
Crop121 174 of 4 0.80None
Midgut151 44 of 4 0.90None
Tubule82 44 of 4 0.50Down
Hindgut165 64 of 4 1.00None
Heart75 54 of 4 0.47Down
Fat body131 184 of 4 0.82Down
Ovary313 94 of 4 2.00Up
Testis168 64 of 4 1.10None
Male accessory glands208 124 of 4 1.30Up
Virgin spermatheca66 94 of 4 0.41Down
Mated spermatheca58 24 of 4 0.37Down
Adult carcass135 114 of 4 0.80None
Larval CNS220 84 of 4 1.37Up
Larval Salivary gland120 74 of 4 0.75Down
Larval midgut75 34 of 4 0.47Down
Larval tubule77 64 of 4 0.50Down
Larval hindgut90 14 of 4 0.56Down
Larval fat body104 134 of 4 0.70Down
Larval trachea67 84 of 4 0.42Down
Larval carcass59 34 of 4 0.37Down
S2 cells (growing)181 24 of 4 1.13Up
Whole fly160 54 of 4



PP2A B' subunit (PP2A-B):

Annotation Number : CG7913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042693
Gbrowse : chr3R:13998565-14003768 (+) // 100.0 //
Probeset : 1628476_at
Accessions : protein= NP_001138070; /// NP_001138071; /// NP_001138072; /// NP_650681; /// NP_732293; /// NP_732294; /// NP_732295; /// NP_732296;, nucleotide= NM_001144598; /// NM_001144599; /// NM_001144600; /// NM_142424; /// NM_169787; /// NM_169788; /// NM_169789; /// NM_169790;
Pathway : 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008601 // protein phosphatase type 2A regulator activity
FlyMine data for FBgn0042693.
BDGP gene expression has embryonic in situ data for PP2A-B': 4 pix of staining in 1 body parts.
BioGrid reports that CG7913 interacts with CG8235 .
TRiP has 2 RNAi stocks for FBgn0042693 available for purchase.
VDRC has 3 RNAi stocks for FBgn0042693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 24 of 4 0.90None
Head78 24 of 4 1.90Up
Eye43 44 of 4 1.07None
Thoracicoabdominal ganglion46 14 of 4 1.10None
Salivary gland76 124 of 4 1.89None
Crop116 14 of 4 2.90Up
Midgut57 54 of 4 1.40None
Tubule121 84 of 4 3.00Up
Hindgut116 44 of 4 2.90Up
Heart85 44 of 4 2.13Up
Fat body193 284 of 4 4.81Up
Ovary29 14 of 4 0.70None
Testis19 24 of 4 0.50Down
Male accessory glands60 14 of 4 1.50Up
Virgin spermatheca167 94 of 4 4.15Up
Mated spermatheca115 34 of 4 2.86Up
Adult carcass136 94 of 4 3.40Up
Larval CNS12 24 of 4 0.32Down
Larval Salivary gland15 14 of 4 0.39Down
Larval midgut34 13 of 4 0.85None
Larval tubule127 44 of 4 3.20Up
Larval hindgut46 34 of 4 1.14None
Larval fat body35 34 of 4 0.90None
Larval trachea36 64 of 4 0.91None
Larval carcass22 04 of 4 0.57Down
S2 cells (growing)31 24 of 4 0.79None
Whole fly40 54 of 4

Looking for FBgn0042693. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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