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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042701 through 18771 annotations produced 1 hits



Microsomal glutathione S-transferase-like (Mgstl):

Annotation Number : CG1742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025814 /// FBgn0042701
Gbrowse : chrX:20914098-20915141 (+) // 100.0 //
Probeset : 1631058_s_at
Accessions : protein= NP_524696; /// NP_728382;, nucleotide= NM_079957; /// NM_167724;
Pathway : 0005741 // mitochondrial outer membrane // inferred from sequence or structural similarity /// 0005792 // microsome // i
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0025814 /// FBgn0042701.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain497 ± 114 of 4 0.50Down
Head1491 ± 1014 of 4 1.60Up
Eye1093 ± 864 of 4 1.16None
Thoracicoabdominal ganglion561 ± 114 of 4 0.60Down
Salivary gland302 ± 234 of 4 0.32Down
Crop2394 ± 864 of 4 2.50Up
Midgut1367 ± 444 of 4 1.40Up
Tubule2494 ± 1094 of 4 2.60Up
Hindgut1967 ± 574 of 4 2.10Up
Heart3760 ± 1614 of 4 3.98Up
Fat body2749 ± 2854 of 4 2.91Up
Ovary487 ± 54 of 4 0.50Down
Testis136 ± 54 of 4 0.10Down
Male accessory glands375 ± 364 of 4 0.40Down
Virgin spermatheca1094 ± 664 of 4 1.16None
Mated spermatheca1059 ± 164 of 4 1.12None
Adult carcass3618 ± 834 of 4 3.80Up
Larval CNS506 ± 504 of 4 0.54Down
Larval Salivary gland362 ± 144 of 4 0.38Down
Larval midgut1171 ± 254 of 4 1.24None
Larval tubule930 ± 674 of 4 1.00None
Larval hindgut743 ± 234 of 4 0.79None
Larval fat body725 ± 824 of 4 0.80None
Larval trachea1015 ± 344 of 4 1.07None
Larval carcass663 ± 404 of 4 0.70Down
S2 cells (growing)1280 ± 234 of 4 1.36Up
Whole fly944 ± 784 of 4

Looking for FBgn0042701. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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