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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043001 through 18771 annotations produced 1 hits



Chrac-16 (Chrac-16):

Annotation Number : CG15736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043001
Gbrowse : chrX:11911306-11911989 (-) // 100.0 //
Probeset : 1637610_at
Accessions : protein= NP_572776;, nucleotide= NM_132548;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0008623 // chromatin accessibility complex // inferr
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0043001.
BDGP gene expression has embryonic in situ data for Chrac-16: 15 pix of staining in 7 body parts.
BioGrid reports that CG15736 interacts with CG5315 Dmel CG13399 CG8625 CG8625 CG1966 Dmel CG13399 CG8625 CG1966 CG8625 .
VDRC has 3 RNAi stocks for FBgn0043001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 24 of 4 0.30Down
Head48 24 of 4 0.20Down
Eye79 44 of 4 0.41Down
Thoracicoabdominal ganglion39 24 of 4 0.20Down
Salivary gland69 64 of 4 0.35Down
Crop60 44 of 4 0.30Down
Midgut40 54 of 4 0.20Down
Tubule26 04 of 4 0.10Down
Hindgut38 14 of 4 0.20Down
Heart25 34 of 4 0.13Down
Fat body29 24 of 4 0.15Down
Ovary445 204 of 4 2.30Up
Testis44 14 of 4 0.20Down
Male accessory glands196 54 of 4 1.00None
Virgin spermatheca27 24 of 4 0.14Down
Mated spermatheca23 24 of 4 0.12Down
Adult carcass36 33 of 4 0.20Down
Larval CNS398 574 of 4 2.04Up
Larval Salivary gland141 104 of 4 0.72Down
Larval midgut40 14 of 4 0.21Down
Larval tubule63 44 of 4 0.30Down
Larval hindgut56 24 of 4 0.29Down
Larval fat body58 34 of 4 0.30Down
Larval trachea110 144 of 4 0.57Down
Larval carcass47 44 of 4 0.24Down
S2 cells (growing)56 34 of 4 0.29Down
Whole fly195 54 of 4

Looking for FBgn0043001. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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