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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043012 through 18771 annotations produced 1 hits



AP-2sigma (AP-2sigma):

Annotation Number : CG6056
Flybase ID : FBgn0043012
Gbrowse : chr3R:17094930-17095799 (-) // 100.0 //
Probeset : 1627202_at
Accessions : protein= NP_650961;, nucleotide= NM_142704;
Pathway : 0008021 // synaptic vesicle // traceable author statement /// 0030117 // membrane coat // inferred from electronic annot
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferre
FlyMine data for FBgn0043012.
BDGP gene expression has embryonic in situ data for AP-2sigma: 11 pix of staining in 8 body parts.
Homophila reports that CG6056 is a close match (8e-33) to human gene AP1S2;MRX59 (NP_003907), a gene associated with Mental retardation, X-linked 59, 300630 (3).
TRiP has 1 RNAi stocks for FBgn0043012 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043012 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain983 184 of 4 2.60Up
Head563 194 of 4 1.50Up
Eye570 164 of 4 1.54Up
Thoracicoabdominal ganglion1019 444 of 4 2.70Up
Salivary gland468 274 of 4 1.26Up
Crop398 114 of 4 1.10None
Midgut358 134 of 4 1.00None
Tubule570 234 of 4 1.50Up
Hindgut454 124 of 4 1.20Up
Heart920 284 of 4 2.48Up
Fat body336 164 of 4 0.90Down
Ovary534 54 of 4 1.40Up
Testis161 34 of 4 0.40Down
Male accessory glands243 164 of 4 0.70Down
Virgin spermatheca284 44 of 4 0.77Down
Mated spermatheca259 84 of 4 0.70Down
Adult carcass349 74 of 4 0.90None
Larval CNS850 364 of 4 2.29Up
Larval Salivary gland856 574 of 4 2.30Up
Larval midgut354 44 of 4 0.95None
Larval tubule1065 184 of 4 2.90Up
Larval hindgut555 184 of 4 1.50Up
Larval fat body786 814 of 4 2.10Up
Larval trachea618 264 of 4 1.66Up
Larval carcass530 314 of 4 1.43Up
S2 cells (growing)370 74 of 4 1.00None
Whole fly371 94 of 4

Looking for FBgn0043012. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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