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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043025 through 18771 annotations produced 1 hits



male-specific IDGF (Msi):

Annotation Number : CG32178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043025
Gbrowse : chr3L:17748022-17750036 (-) // 100.0 //
Probeset : 1632885_at
Accessions : protein= NP_001036612; /// NP_001036613; /// NP_525020;, nucleotide= NM_001043147; /// NM_001043148; /// NM_080281;
Pathway : 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from
Interpro : 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from s
FlyMine data for FBgn0043025.
VDRC has 2 RNAi stocks for FBgn0043025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head6 10 of 4 0.10Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion6 20 of 4 0.10Down
Salivary gland11 41 of 4 0.10Down
Crop8 21 of 4 0.10Down
Midgut13 21 of 4 0.10Down
Tubule5 10 of 4 0.00Down
Hindgut7 12 of 4 0.10Down
Heart4 20 of 4 0.03Down
Fat body11 22 of 4 0.10Down
Ovary3 11 of 4 0.00Down
Testis1209 364 of 410.20Up
Male accessory glands11 42 of 4 0.10Down
Virgin spermatheca7 02 of 4 0.06Down
Mated spermatheca9 11 of 4 0.08Down
Adult carcass9 10 of 4 0.10Down
Larval CNS4 11 of 4 0.04Down
Larval Salivary gland6 10 of 4 0.05Down
Larval midgut9 20 of 4 0.08Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut5 12 of 4 0.05Down
Larval fat body128 674 of 4 1.10None
Larval trachea6 41 of 4 0.05Down
Larval carcass5 11 of 4 0.04Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly118 74 of 4

Looking for FBgn0043025. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime