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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043069 through 18771 annotations produced 2 hits



/// Misexpression suppressor of KSR 4 (CG31274 /// MESK4):

Annotation Number : CG31447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043069 /// FBgn0051274
Gbrowse : chr3R:12814551-12816041 (+) // 100.0 // /// chr3R:12818763-12820253 (+) // 99.93 //
Probeset : 1632011_at
Accessions : protein= NP_525017; /// NP_732186; /// NP_732187;, nucleotide= NM_080278; /// NM_169737; /// NM_169738;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0043069 /// FBgn0051274.
BioGrid reports that CG31447 interacts with CG9375 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.50Down
Head19 24 of 4 0.20Down
Eye14 14 of 4 0.19Down
Thoracicoabdominal ganglion45 24 of 4 0.60Down
Salivary gland8 20 of 4 0.10Down
Crop6 10 of 4 0.10Down
Midgut12 12 of 4 0.20Down
Tubule844 2014 of 410.60Up
Hindgut25 24 of 4 0.30Down
Heart13 04 of 4 0.16Down
Fat body9 52 of 4 0.12Down
Ovary146 14 of 4 1.80Up
Testis4 11 of 4 0.10Down
Male accessory glands129 44 of 4 1.60Up
Virgin spermatheca11 14 of 4 0.15Down
Mated spermatheca8 02 of 4 0.11Down
Adult carcass10 11 of 4 0.10Down
Larval CNS9 14 of 4 0.13Down
Larval Salivary gland23 14 of 4 0.30Down
Larval midgut10 10 of 4 0.13Down
Larval tubule804 464 of 410.10Up
Larval hindgut17 24 of 4 0.21Down
Larval fat body3520 3784 of 444.40Up
Larval trachea12 63 of 4 0.16Down
Larval carcass16 23 of 4 0.20Down
S2 cells (growing)108 114 of 4 1.37None
Whole fly79 44 of 4



/// Misexpression suppressor of KSR 4 (CG31274 /// MESK4):

Annotation Number : CG31274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043069 /// FBgn0051274
Gbrowse : chr3R:12818755-12819819 (+) // 100.0 // /// chr3R:12814543-12815607 (+) // 99.9 //
Probeset : 1636736_s_at
Accessions : protein= NP_525017; /// NP_732186; /// NP_732187;, nucleotide= NM_080278; /// NM_169737; /// NM_169738;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0043069 /// FBgn0051274.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 04 of 4 0.50Down
Head11 12 of 4 0.30Down
Eye8 21 of 4 0.21Down
Thoracicoabdominal ganglion20 14 of 4 0.50Down
Salivary gland4 20 of 4 0.11Down
Crop5 10 of 4 0.10Down
Midgut3 20 of 4 0.10Down
Tubule207 524 of 4 5.50Up
Hindgut15 14 of 4 0.40Down
Heart7 20 of 4 0.19Down
Fat body7 20 of 4 0.19Down
Ovary66 14 of 4 1.80Up
Testis2 00 of 4 0.10Down
Male accessory glands55 24 of 4 1.50Up
Virgin spermatheca2 10 of 4 0.06Down
Mated spermatheca2 00 of 4 0.07Down
Adult carcass4 10 of 4 0.10Down
Larval CNS4 22 of 4 0.12Down
Larval Salivary gland13 22 of 4 0.35Down
Larval midgut8 10 of 4 0.23Down
Larval tubule396 324 of 410.60Up
Larval hindgut6 11 of 4 0.18Down
Larval fat body1661 1794 of 444.30Up
Larval trachea7 51 of 4 0.19Down
Larval carcass7 20 of 4 0.19Down
S2 cells (growing)72 44 of 4 1.94Up
Whole fly37 14 of 4

Looking for FBgn0043069. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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