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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043070 through 18771 annotations produced 3 hits



Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CT35853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17403384-17403838 (+) // 100.0 //
Probeset : 1635541_s_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 64 of 411.00Up
Head72 124 of 4 3.50Up
Eye38 34 of 4 1.87Up
Thoracicoabdominal ganglion163 174 of 4 8.00Up
Salivary gland27 42 of 4 1.33None
Crop11 21 of 4 0.60Down
Midgut11 30 of 4 0.60None
Tubule16 13 of 4 0.80Down
Hindgut16 14 of 4 0.80None
Heart7 03 of 4 0.38Down
Fat body13 23 of 4 0.64Down
Ovary9 03 of 4 0.40Down
Testis10 03 of 4 0.50Down
Male accessory glands46 44 of 4 2.30Up
Virgin spermatheca9 11 of 4 0.44Down
Mated spermatheca9 10 of 4 0.45Down
Adult carcass35 43 of 4 1.70Up
Larval CNS16 34 of 4 0.81None
Larval Salivary gland9 32 of 4 0.46Down
Larval midgut9 10 of 4 0.46Down
Larval tubule15 02 of 4 0.70Down
Larval hindgut5 21 of 4 0.27Down
Larval fat body11 20 of 4 0.50Down
Larval trachea5 00 of 4 0.26Down
Larval carcass12 13 of 4 0.62Down
S2 cells (growing)12 04 of 4 0.59Down
Whole fly20 13 of 4



Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CG15669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17389590-17401091 (+) // 99.39 //
Probeset : 1636999_a_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
Homophila reports that CG15669 is a close match (1e-60) to human gene CMT4D;HMSNL;NDRG1 (NP_006087), a gene associated with Charcot-Marie-Tooth disease, type 4D, 601455 (3).
BioGrid reports that CG15669 interacts with CG18497 CG2910 CG30026 CG30159 CG30497 CG5134 CG5272 CG7535 CG9916 CG9375 CG9375 .
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain610 124 of 4 3.40Up
Head315 354 of 4 1.70Up
Eye397 174 of 4 2.19Up
Thoracicoabdominal ganglion656 564 of 4 3.60Up
Salivary gland485 104 of 4 2.67Up
Crop374 344 of 4 2.10Up
Midgut202 124 of 4 1.10None
Tubule285 294 of 4 1.60Up
Hindgut487 234 of 4 2.70Up
Heart159 44 of 4 0.88None
Fat body71 154 of 4 0.39Down
Ovary173 84 of 4 1.00None
Testis573 164 of 4 3.20Up
Male accessory glands81 84 of 4 0.40Down
Virgin spermatheca77 54 of 4 0.42Down
Mated spermatheca57 34 of 4 0.32Down
Adult carcass162 54 of 4 0.90None
Larval CNS324 294 of 4 1.78Up
Larval Salivary gland83 54 of 4 0.46Down
Larval midgut126 84 of 4 0.69Down
Larval tubule286 144 of 4 1.60Up
Larval hindgut298 94 of 4 1.64Up
Larval fat body119 324 of 4 0.70None
Larval trachea77 104 of 4 0.42Down
Larval carcass119 184 of 4 0.66Down
S2 cells (growing)279 34 of 4 1.54Up
Whole fly181 74 of 4



Misexpression suppressor of KSR 2 (MESK2):

Annotation Number : CG15669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043070
Gbrowse : chr2R:17389590-17404747 (+) // 100.0 //
Probeset : 1634325_a_at
Accessions : protein= NP_523804; /// NP_726076; /// NP_726077; /// NP_726078; /// NP_995912; /// NP_995913; /// NP_995914; /// NP_995915; /// NP_995916;, nucleotide= NM_079080; /// NM_166454; /// NM_166455; /// NM_166456; /// NM_206190; /// NM_206191; /// NM_206192; /// NM_206193; /// NM_206194;
FlyMine data for FBgn0043070.
BDGP gene expression has embryonic in situ data for MESK2: 4 pix of staining in 1 body parts.
Homophila reports that CG15669 is a close match (1e-60) to human gene CMT4D;HMSNL;NDRG1 (NP_006087), a gene associated with Charcot-Marie-Tooth disease, type 4D, 601455 (3).
BioGrid reports that CG15669 interacts with CG18497 CG2910 CG30026 CG30159 CG30497 CG5134 CG5272 CG7535 CG9916 CG9375 CG9375 .
TRiP has 1 RNAi stocks for FBgn0043070 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1061 314 of 416.50Up
Head396 324 of 4 6.20Up
Eye171 134 of 4 2.68Up
Thoracicoabdominal ganglion1218 224 of 419.00Up
Salivary gland84 74 of 4 1.31None
Crop45 44 of 4 0.70Down
Midgut23 14 of 4 0.40Down
Tubule29 44 of 4 0.50Down
Hindgut65 04 of 4 1.00None
Heart21 14 of 4 0.34Down
Fat body35 54 of 4 0.55Down
Ovary23 04 of 4 0.40Down
Testis9 14 of 4 0.10Down
Male accessory glands114 74 of 4 1.80Up
Virgin spermatheca28 24 of 4 0.45Down
Mated spermatheca21 04 of 4 0.33Down
Adult carcass115 124 of 4 1.80Up
Larval CNS138 124 of 4 2.16Up
Larval Salivary gland13 14 of 4 0.21Down
Larval midgut14 14 of 4 0.23Down
Larval tubule26 14 of 4 0.40Down
Larval hindgut17 04 of 4 0.27Down
Larval fat body21 24 of 4 0.30Down
Larval trachea10 54 of 4 0.16Down
Larval carcass20 04 of 4 0.33Down
S2 cells (growing)12 04 of 4 0.20Down
Whole fly64 14 of 4

Looking for FBgn0043070. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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