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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043455 through 18771 annotations produced 1 hits



(CG5986):

Annotation Number : CG5986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043455
Gbrowse : chr3R:19873511-19874891 (+) // 100.0 //
Probeset : 1624613_at
Accessions : protein= NP_651207;, nucleotide= NM_142950;
FlyMine data for FBgn0043455.
BDGP gene expression has embryonic in situ data for BEST:LP03871: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0043455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 ± 44 of 4 1.10None
Head115 ± 34 of 4 0.80None
Eye166 ± 44 of 4 1.16None
Thoracicoabdominal ganglion144 ± 54 of 4 1.00None
Salivary gland122 ± 84 of 4 0.86None
Crop135 ± 54 of 4 0.90None
Midgut91 ± 24 of 4 0.60None
Tubule185 ± 44 of 4 1.30Up
Hindgut131 ± 44 of 4 0.90None
Heart155 ± 14 of 4 1.09None
Fat body118 ± 104 of 4 0.83None
Ovary278 ± 54 of 4 2.00Up
Testis87 ± 14 of 4 0.60Down
Male accessory glands134 ± 34 of 4 0.90None
Virgin spermatheca141 ± 14 of 4 0.99None
Mated spermatheca138 ± 44 of 4 0.97None
Adult carcass108 ± 54 of 4 0.80None
Larval CNS195 ± 54 of 4 1.37Up
Larval Salivary gland144 ± 44 of 4 1.02None
Larval midgut64 ± 34 of 4 0.45Down
Larval tubule173 ± 44 of 4 1.20None
Larval hindgut91 ± 44 of 4 0.64None
Larval fat body133 ± 124 of 4 0.90None
Larval trachea162 ± 104 of 4 1.14None
Larval carcass100 ± 104 of 4 0.70None
S2 cells (growing)140 ± 44 of 4 0.99None
Whole fly142 ± 164 of 4

Looking for FBgn0043455. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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