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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043470 through 18771 annotations produced 1 hits



lambdaTry (lambdaTry):

Annotation Number : CG12350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043470
Gbrowse : chr2R:7224352-7225301 (+) // 100.0 //
Probeset : 1630241_at
Accessions : protein= NP_610673;, nucleotide= NM_136829;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0043470.
BDGP gene expression has embryonic in situ data for lambdaTry: 11 pix of staining in 2 body parts.
Homophila reports that CG12350 is a close match (3e-12) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 3 RNAi stocks for FBgn0043470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head6 ± 00 of 4 0.00Down
Eye5 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut4400 ± 1224 of 4 7.80Up
Tubule5 ± 10 of 4 0.00Down
Hindgut26 ± 64 of 4 0.00Down
Heart4 ± 10 of 4 0.01Down
Fat body6 ± 10 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 00 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 11 of 4 0.01Down
Mated spermatheca5 ± 11 of 4 0.01Down
Adult carcass13 ± 10 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut1641 ± 1854 of 4 2.90Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.01Down
Larval fat body3 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.00Down
Larval carcass3 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 10 of 4 0.00Down
Whole fly565 ± 614 of 4

Looking for FBgn0043470. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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