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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0043471 through 18771 annotations produced 1 hits

kappaTry (kappaTry):

Annotation Number : CG12388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043471
Gbrowse : chr2R:7225397-7226282 (-) // 100.0 //
Probeset : 1632055_at
Accessions : protein= NP_610674;, nucleotide= NM_136830;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0043471.
Homophila reports that CG12388 is a close match (4e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 1 RNAi stocks for FBgn0043471 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.01Down
Thoracicoabdominal ganglion3 00 of 4 0.00Down
Salivary gland5 30 of 4 0.03Down
Crop3 10 of 4 0.00Down
Midgut2089 284 of 412.70Up
Tubule3 10 of 4 0.00Down
Hindgut31 54 of 4 0.20Down
Heart1 00 of 4 0.01Down
Fat body0 00 of 4 0.00Down
Ovary4 10 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.00Down
Adult carcass1 00 of 4 0.00Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut687 514 of 4 4.19Up
Larval tubule3 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.02Down
Larval fat body4 10 of 4 0.00Down
Larval trachea0 00 of 4 0.00Down
Larval carcass2 00 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly164 284 of 4

Looking for FBgn0043471. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime