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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043534 through 18771 annotations produced 1 hits



Odorant-binding protein 57b /// Odorant-binding protein 57c (Obp57b /// Obp57c):

Annotation Number : CG30142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034509 /// FBgn0043534
Gbrowse : chr2R:16391770-16392259 (+) // 100.0 //
Probeset : 1641288_at
Accessions : protein= NP_725965;, nucleotide= NM_166394;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0034509 /// FBgn0043534.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 01 of 4 0.10Down
Head428 514 of 4 4.90Up
Eye165 104 of 4 1.91Up
Thoracicoabdominal ganglion6 12 of 4 0.10Down
Salivary gland12 10 of 4 0.15Down
Crop392 304 of 4 4.50Up
Midgut5 10 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut153 34 of 4 1.80Up
Heart21 14 of 4 0.24Down
Fat body19 64 of 4 0.23Down
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca11 12 of 4 0.13Down
Mated spermatheca15 43 of 4 0.17Down
Adult carcass527 304 of 4 6.10Up
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland5 11 of 4 0.06Down
Larval midgut7 12 of 4 0.08Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut5 12 of 4 0.06Down
Larval fat body6 20 of 4 0.10Down
Larval trachea7 43 of 4 0.09Down
Larval carcass7 21 of 4 0.08Down
S2 cells (growing)3 10 of 4 0.04Down
Whole fly86 94 of 4

Looking for FBgn0043534. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime