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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043550 through 18771 annotations produced 1 hits



Tetraspanin 68C (Tsp68C):

Annotation Number : CG32136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043550
Gbrowse : chr3L:13836960-13838151 (+) // 100.0 //
Probeset : 1623096_a_at
Accessions : protein= NP_729926; /// NP_729927;, nucleotide= NM_168558; /// NM_168559;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0043550.
TRiP has 1 RNAi stocks for FBgn0043550 available for purchase.
VDRC has 3 RNAi stocks for FBgn0043550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.70None
Head2 00 of 4 1.70None
Eye5 20 of 4 4.31None
Thoracicoabdominal ganglion0 00 of 4 0.40None
Salivary gland2 10 of 4 2.20None
Crop0 00 of 4 0.50None
Midgut0 00 of 4 0.60None
Tubule1 00 of 4 1.30None
Hindgut1 00 of 4 1.00None
Heart3 10 of 4 2.49None
Fat body2 10 of 4 1.92None
Ovary0 00 of 4 0.30Down
Testis3 10 of 4 2.40None
Male accessory glands1 00 of 4 0.90None
Virgin spermatheca0 00 of 4 0.33Down
Mated spermatheca1 00 of 4 1.10None
Adult carcass3 10 of 4 2.70None
Larval CNS12 11 of 4 9.76Up
Larval Salivary gland1 10 of 4 1.37None
Larval midgut0 00 of 4 0.45None
Larval tubule0 00 of 4 0.60None
Larval hindgut0 00 of 4 0.57None
Larval fat body2 10 of 4 2.10None
Larval trachea0 00 of 4 0.49None
Larval carcass0 00 of 4 0.67None
S2 cells (growing)0 00 of 4 0.27Down
Whole fly1 00 of 4

Looking for FBgn0043550. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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