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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043575 through 18771 annotations produced 1 hits



PGRP-SC2 (PGRP-SC2):

Annotation Number : CG14745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043575
Gbrowse : chr2R:4604471-4605026 (+) // 100.0 //
Probeset : 1629118_at
Accessions : protein= NP_610410;, nucleotide= NM_136566;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0043575.
VDRC has 4 RNAi stocks for FBgn0043575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 33 of 4 0.00Down
Head49 ± 124 of 4 0.10Down
Eye40 ± 34 of 4 0.04Down
Thoracicoabdominal ganglion21 ± 24 of 4 0.00Down
Salivary gland31 ± 31 of 4 0.03Down
Crop21 ± 23 of 4 0.00Down
Midgut5189 ± 714 of 4 5.70Up
Tubule27 ± 24 of 4 0.00Down
Hindgut24 ± 23 of 4 0.00Down
Heart61 ± 84 of 4 0.07Down
Fat body93 ± 903 of 4 0.10Down
Ovary16 ± 13 of 4 0.00Down
Testis17 ± 04 of 4 0.00Down
Male accessory glands18 ± 50 of 4 0.00Down
Virgin spermatheca165 ± 444 of 4 0.18Down
Mated spermatheca92 ± 184 of 4 0.10Down
Adult carcass53 ± 61 of 4 0.10Down
Larval CNS20 ± 54 of 4 0.02Down
Larval Salivary gland23 ± 14 of 4 0.03Down
Larval midgut4616 ± 1704 of 4 5.09Up
Larval tubule30 ± 24 of 4 0.00Down
Larval hindgut27 ± 12 of 4 0.03Down
Larval fat body184 ± 454 of 4 0.20Down
Larval trachea12 ± 23 of 4 0.01Down
Larval carcass41 ± 34 of 4 0.05Down
S2 cells (growing)17 ± 23 of 4 0.02Down
Whole fly906 ± 1264 of 4

Looking for FBgn0043575. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime