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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043577 through 18771 annotations produced 1 hits



PGRP-SB2 (PGRP-SB2):

Annotation Number : CG9697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043577
Gbrowse : chr3L:16719647-16720256 (+) // 100.0 //
Probeset : 1639884_at
Accessions : protein= NP_648916;, nucleotide= NM_140659;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0043577.
VDRC has 3 RNAi stocks for FBgn0043577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 01 of 4 0.40None
Head3 10 of 4 0.60None
Eye2 10 of 4 0.45None
Thoracicoabdominal ganglion5 10 of 4 0.90None
Salivary gland10 40 of 4 1.68None
Crop4 10 of 4 0.70None
Midgut6 10 of 4 1.00None
Tubule4 00 of 4 0.80None
Hindgut3 10 of 4 0.60None
Heart2 00 of 4 0.41None
Fat body1 00 of 4 0.22None
Ovary2 00 of 4 0.30None
Testis2 10 of 4 0.50None
Male accessory glands11 21 of 4 1.90None
Virgin spermatheca6 10 of 4 1.08None
Mated spermatheca6 20 of 4 1.07None
Adult carcass9 10 of 4 1.50None
Larval CNS1 10 of 4 0.30None
Larval Salivary gland8 11 of 4 1.36None
Larval midgut6 21 of 4 1.06None
Larval tubule3 10 of 4 0.60None
Larval hindgut3 10 of 4 0.54None
Larval fat body99 931 of 416.40None
Larval trachea3 30 of 4 0.54None
Larval carcass7 01 of 4 1.23None
S2 cells (growing)3 10 of 4 0.60None
Whole fly6 20 of 4

Looking for FBgn0043577. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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