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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043783 through 18771 annotations produced 2 hits



aldose 1-epimerase (CG32444):

Annotation Number : CG32444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043783
Gbrowse : chr3L:21630046-21632164 (+) // 100.0 //
Probeset : 1633684_at
Accessions : protein= NP_730670;, nucleotide= NM_168930;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004034 // aldose 1-epimerase activity // infer
FlyMine data for FBgn0043783.
VDRC has 3 RNAi stocks for FBgn0043783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 54 of 4 0.10Down
Head945 ± 1604 of 4 1.50None
Eye323 ± 704 of 4 0.53Down
Thoracicoabdominal ganglion98 ± 104 of 4 0.20Down
Salivary gland348 ± 184 of 4 0.57Down
Crop1915 ± 1164 of 4 3.10Up
Midgut936 ± 954 of 4 1.50Up
Tubule2810 ± 2634 of 4 4.60Up
Hindgut592 ± 394 of 4 1.00None
Heart1794 ± 1844 of 4 2.91Up
Fat body2798 ± 2674 of 4 4.55Up
Ovary2 ± 00 of 4 0.00Down
Testis914 ± 214 of 4 1.50Up
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca4004 ± 2054 of 4 6.51Up
Mated spermatheca2447 ± 4344 of 4 3.98Up
Adult carcass2756 ± 1394 of 4 4.50Up
Larval CNS5 ± 12 of 4 0.01Down
Larval Salivary gland6 ± 11 of 4 0.01Down
Larval midgut145 ± 294 of 4 0.24Down
Larval tubule23 ± 84 of 4 0.00Down
Larval hindgut38 ± 74 of 4 0.06Down
Larval fat body219 ± 194 of 4 0.40Down
Larval trachea13 ± 53 of 4 0.02Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)2 ± 01 of 4 0.00Down
Whole fly615 ± 644 of 4



aldose 1-epimerase /// (CG32444 /// CG32445):

Annotation Number : CG32445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052445
Gbrowse : chr3L:21632481-21633810 (+) // 100.0 //
Probeset : 1630209_at
Accessions : protein= NP_730671;, nucleotide= NM_168931;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004034 // aldose 1-epimerase activity // infer
FlyMine data for FBgn0052445.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis1589 ± 614 of 410.50Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body157 ± 933 of 4 1.00None
Larval trachea5 ± 60 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly151 ± 34 of 4

Looking for FBgn0043783. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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