FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0043799 through 18771 annotations produced 2 hits

(CG11089):

Annotation Number : CG11089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039241
Gbrowse : chr3R:20702789-20707200 (+) // 100.0 //
Probeset : 1631392_at
Accessions : protein= NP_651305; /// NP_733057;, nucleotide= NM_143048; /// NM_170178;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0039241.
BDGP gene expression has embryonic in situ data for CG11089: 10 pix of staining in 13 body parts.
Homophila reports that CG11089 is a close match (0) to human gene ATIC;PURH;AICAR (NP_004035), a gene associated with AICA-ribosiduria due to ATIC deficiency, 608688 (3).
VDRC has 1 RNAi stocks for FBgn0039241 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	97 ± 8	4 of 4	0.10	Down
Head	1088 ± 107	4 of 4	1.60	Up
Eye	820 ± 110	4 of 4	1.22	None
Thoracicoabdominal ganglion	127 ± 3	4 of 4	0.20	Down
Salivary gland	183 ± 11	4 of 4	0.27	Down
Crop	88 ± 4	4 of 4	0.10	Down
Midgut	198 ± 12	4 of 4	0.30	Down
Tubule	296 ± 45	4 of 4	0.40	Down
Hindgut	161 ± 7	4 of 4	0.20	Down
Heart	552 ± 12	4 of 4	0.82	None
Fat body	1796 ± 194	4 of 4	2.67	Up
Ovary	856 ± 13	4 of 4	1.30	None
Testis	70 ± 1	4 of 4	0.10	Down
Male accessory glands	139 ± 4	4 of 4	0.20	Down
Virgin spermatheca	3696 ± 123	4 of 4	5.49	Up
Mated spermatheca	2042 ± 112	4 of 4	3.03	Up
Adult carcass	946 ± 40	4 of 4	1.40	Up
Larval CNS	365 ± 12	4 of 4	0.54	Down
Larval Salivary gland	594 ± 49	4 of 4	0.88	None
Larval midgut	179 ± 13	4 of 4	0.27	Down
Larval tubule	589 ± 81	4 of 4	0.90	None
Larval hindgut	251 ± 20	4 of 4	0.37	Down
Larval fat body	8577 ± 849	4 of 4	12.70	Up
Larval trachea	292 ± 34	4 of 4	0.43	Down
Larval carcass	320 ± 40	4 of 4	0.48	Down
S2 cells (growing)	142 ± 4	4 of 4	0.21	Down
Whole fly	673 ± 63	4 of 4

(CG31381):

Annotation Number : CG31381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043799
Gbrowse : chr3R:20702942-20704507 (+) // 100.0 //
Probeset : 1628813_at
Accessions : protein= NP_733057;, nucleotide= NM_170178;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0043799.
VDRC has 2 RNAi stocks for FBgn0043799 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	4 of 4	0.50	Down
Head	10 ± 0	3 of 4	0.50	Down
Eye	18 ± 2	4 of 4	0.86	None
Thoracicoabdominal ganglion	12 ± 0	4 of 4	0.60	Down
Salivary gland	22 ± 3	2 of 4	1.06	None
Crop	15 ± 1	3 of 4	0.70	Down
Midgut	14 ± 0	1 of 4	0.70	Down
Tubule	9 ± 2	2 of 4	0.50	Down
Hindgut	7 ± 2	2 of 4	0.40	Down
Heart	18 ± 2	3 of 4	0.89	None
Fat body	29 ± 4	4 of 4	1.40	Up
Ovary	47 ± 3	4 of 4	2.30	Up
Testis	6 ± 1	3 of 4	0.30	Down
Male accessory glands	30 ± 3	4 of 4	1.40	None
Virgin spermatheca	17 ± 1	3 of 4	0.82	None
Mated spermatheca	21 ± 2	4 of 4	1.02	None
Adult carcass	11 ± 4	2 of 4	0.50	None
Larval CNS	21 ± 4	4 of 4	1.02	None
Larval Salivary gland	36 ± 5	4 of 4	1.72	None
Larval midgut	9 ± 1	0 of 4	0.42	Down
Larval tubule	9 ± 2	3 of 4	0.50	Down
Larval hindgut	10 ± 1	3 of 4	0.50	Down
Larval fat body	30 ± 4	4 of 4	1.40	None
Larval trachea	25 ± 2	4 of 4	1.21	Up
Larval carcass	14 ± 3	0 of 4	0.66	None
S2 cells (growing)	13 ± 1	4 of 4	0.63	Down
Whole fly	21 ± 0	4 of 4

Looking for FBgn0043799. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720