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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0043865 through 18771 annotations produced 1 hits



Stromalin-2 (SA-2):

Annotation Number : CG13916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043865
Gbrowse : chr3L:1434342-1437643 (-) // 100.0 //
Probeset : 1630834_at
Accessions : protein= NP_001097473; /// NP_612109;, nucleotide= NM_001104003; /// NM_138265;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from sequence o
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0043865.
VDRC has 3 RNAi stocks for FBgn0043865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.50None
Head1 00 of 4 0.20Down
Eye1 00 of 4 0.28Down
Thoracicoabdominal ganglion5 11 of 4 0.80None
Salivary gland7 30 of 4 1.22None
Crop3 00 of 4 0.60Down
Midgut11 14 of 4 1.90Up
Tubule4 00 of 4 0.60Down
Hindgut3 10 of 4 0.50None
Heart3 10 of 4 0.50None
Fat body5 20 of 4 0.81None
Ovary3 11 of 4 0.60None
Testis56 14 of 4 8.70Up
Male accessory glands4 21 of 4 0.60None
Virgin spermatheca4 10 of 4 0.69None
Mated spermatheca4 20 of 4 0.75None
Adult carcass5 11 of 4 0.80None
Larval CNS3 21 of 4 0.50None
Larval Salivary gland9 22 of 4 1.45None
Larval midgut10 11 of 4 1.68Up
Larval tubule5 10 of 4 0.80None
Larval hindgut5 00 of 4 0.81None
Larval fat body17 52 of 4 2.70None
Larval trachea4 21 of 4 0.63None
Larval carcass2 10 of 4 0.46None
S2 cells (growing)6 11 of 4 1.08None
Whole fly6 01 of 4

Looking for FBgn0043865. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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