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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044011 through 18771 annotations produced 1 hits



Spn43Ad (Spn43Ad):

Annotation Number : CG1859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044011
Gbrowse : chr2R:3041241-3042927 (-) // 100.0 //
Probeset : 1628564_at
Accessions : protein= NP_610261;, nucleotide= NM_136417;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0044011.
Homophila reports that CG1859 is a close match (3e-11) to human gene SERPINA10;ZPI (NP_057270), a gene associated with {Venous thrombosis, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0044011 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.70None
Head41 ± 44 of 4 4.20Up
Eye27 ± 44 of 4 2.78Up
Thoracicoabdominal ganglion10 ± 21 of 4 1.10None
Salivary gland1 ± 00 of 4 0.15Down
Crop10 ± 10 of 4 1.10None
Midgut1 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut32 ± 33 of 4 3.20Up
Heart67 ± 54 of 4 6.67Up
Fat body87 ± 124 of 4 8.66Up
Ovary0 ± 00 of 4 0.10Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands8 ± 30 of 4 0.80None
Virgin spermatheca85 ± 54 of 4 8.52Up
Mated spermatheca62 ± 44 of 4 6.19Up
Adult carcass54 ± 74 of 4 5.50Up
Larval CNS10 ± 31 of 4 1.04None
Larval Salivary gland2 ± 00 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.12Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut7 ± 00 of 4 0.71None
Larval fat body11 ± 40 of 4 1.10None
Larval trachea1 ± 10 of 4 0.17Down
Larval carcass7 ± 20 of 4 0.72None
S2 cells (growing)0 ± 00 of 4 0.06Down
Whole fly10 ± 10 of 4

Looking for FBgn0044011. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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