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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044030 through 18771 annotations produced 2 hits



/// mitochondrial ribosomal protein S14 (CG32533 /// mRpS14):

Annotation Number : CG32533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052533
Gbrowse : chrX:19368188-19373345 (-) // 99.69 //
Probeset : 1628037_at
Accessions : protein= NP_728244;, nucleotide= NM_167649;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0006412 // translation // inferred from sequence
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005761 // mitochondrial ribosome // inferred
FlyMine data for FBgn0052533.
BDGP gene expression has embryonic in situ data for CG32533: 6 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0052533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 14 of 4 3.10Up
Head15 14 of 4 1.00None
Eye26 14 of 4 1.77Up
Thoracicoabdominal ganglion39 34 of 4 2.60Up
Salivary gland34 52 of 4 2.29Up
Crop21 24 of 4 1.40None
Midgut12 20 of 4 0.80None
Tubule15 23 of 4 1.10None
Hindgut10 11 of 4 0.70None
Heart15 14 of 4 1.04None
Fat body11 21 of 4 0.75None
Ovary23 24 of 4 1.60None
Testis10 02 of 4 0.70None
Male accessory glands19 10 of 4 1.30None
Virgin spermatheca14 11 of 4 0.96None
Mated spermatheca14 02 of 4 0.99None
Adult carcass11 20 of 4 0.70None
Larval CNS63 74 of 4 4.21Up
Larval Salivary gland34 34 of 4 2.30Up
Larval midgut20 30 of 4 1.39None
Larval tubule16 11 of 4 1.10None
Larval hindgut28 14 of 4 1.87Up
Larval fat body13 33 of 4 0.90None
Larval trachea56 84 of 4 3.77Up
Larval carcass17 12 of 4 1.17None
S2 cells (growing)19 24 of 4 1.32None
Whole fly15 14 of 4



mitochondrial ribosomal protein S14 (mRpS14):

Annotation Number : CG32531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044030
Gbrowse : chrX:19373462-19373909 (-) // 100.0 //
Probeset : 1637172_at
Accessions : protein= NP_728245;, nucleotide= NM_167650;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from s
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0044030.
VDRC has 1 RNAi stocks for FBgn0044030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 114 of 4 0.90None
Head183 34 of 4 0.80Down
Eye170 74 of 4 0.72Down
Thoracicoabdominal ganglion333 94 of 4 1.40Up
Salivary gland185 134 of 4 0.79Down
Crop211 144 of 4 0.90None
Midgut197 44 of 4 0.80Down
Tubule255 74 of 4 1.10Up
Hindgut195 64 of 4 0.80Down
Heart206 34 of 4 0.88Down
Fat body212 204 of 4 0.90None
Ovary247 44 of 4 1.00None
Testis91 14 of 4 0.40Down
Male accessory glands185 114 of 4 0.80Down
Virgin spermatheca259 174 of 4 1.10None
Mated spermatheca268 44 of 4 1.14Up
Adult carcass297 184 of 4 1.30Up
Larval CNS236 194 of 4 1.00None
Larval Salivary gland221 134 of 4 0.94None
Larval midgut136 114 of 4 0.58Down
Larval tubule185 64 of 4 0.80Down
Larval hindgut204 64 of 4 0.87Down
Larval fat body132 74 of 4 0.60Down
Larval trachea194 314 of 4 0.83None
Larval carcass150 104 of 4 0.64Down
S2 cells (growing)183 44 of 4 0.78Down
Whole fly235 84 of 4

Looking for FBgn0044030. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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