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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044324 through 18771 annotations produced 1 hits



Chromator (Chro):

Annotation Number : CG10712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044324
Gbrowse : chr3L:22866799-22871864 (-) // 100.0 //
Probeset : 1630859_s_at
Accessions : protein= NP_649426; /// NP_730762; /// NP_730763;, nucleotide= NM_141169; /// NM_168975; /// NM_168976;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0044324.
BioGrid reports that CG10712 interacts with CG5954 CG11138 CG14534 CG15356 CG7285 CG8230 CG9232 .
TRiP has 1 RNAi stocks for FBgn0044324 available for purchase.
VDRC has 2 RNAi stocks for FBgn0044324 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 44 of 4 3.60Up
Head70 54 of 4 1.40Up
Eye59 54 of 4 1.17None
Thoracicoabdominal ganglion90 34 of 4 1.80Up
Salivary gland36 24 of 4 0.73None
Crop42 14 of 4 0.80None
Midgut26 24 of 4 0.50Down
Tubule34 24 of 4 0.70Down
Hindgut35 24 of 4 0.70None
Heart22 34 of 4 0.44Down
Fat body45 64 of 4 0.89None
Ovary109 34 of 4 2.20Up
Testis8 04 of 4 0.20Down
Male accessory glands29 24 of 4 0.60Down
Virgin spermatheca30 24 of 4 0.60Down
Mated spermatheca36 44 of 4 0.71None
Adult carcass24 04 of 4 0.50Down
Larval CNS522 614 of 410.33Up
Larval Salivary gland153 84 of 4 3.03Up
Larval midgut32 14 of 4 0.65Down
Larval tubule29 34 of 4 0.60Down
Larval hindgut62 34 of 4 1.23None
Larval fat body27 44 of 4 0.50Down
Larval trachea96 84 of 4 1.92Up
Larval carcass77 44 of 4 1.53Up
S2 cells (growing)132 44 of 4 2.63Up
Whole fly50 54 of 4

Looking for FBgn0044324. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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