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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0044328 through 18771 annotations produced 1 hits


Annotation Number : CG32052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044328
Gbrowse : chr3L:9797559-9801813 (+) // 100.0 //
Probeset : 1638906_at
Accessions : protein= NP_729555;, nucleotide= NM_168375;
Interpro : 0004767 // sphingomyelin phosphodiesterase activity // inferred from sequence or structural similarity /// 0004767 // sp
FlyMine data for FBgn0044328.
Homophila reports that CG32052 is a close match (8e-16) to human gene NPD;SMPD1 (NP_001007594), a gene associated with Niemann-Pick disease, type A, 257200 (3);Niemann-Pick disease, type B, 607616 (3).
TRiP has 1 RNAi stocks for FBgn0044328 available for purchase.
VDRC has 3 RNAi stocks for FBgn0044328 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 154 of 435.80Up
Head78 44 of 4 7.60Up
Eye53 54 of 4 5.21Up
Thoracicoabdominal ganglion243 104 of 423.60Up
Salivary gland10 50 of 4 1.03None
Crop4 13 of 4 0.40Down
Midgut1 00 of 4 0.10Down
Tubule4 10 of 4 0.40Down
Hindgut2 00 of 4 0.20Down
Heart5 11 of 4 0.52None
Fat body4 02 of 4 0.47Down
Ovary1 01 of 4 0.10Down
Testis2 01 of 4 0.20Down
Male accessory glands6 10 of 4 0.60None
Virgin spermatheca3 10 of 4 0.35Down
Mated spermatheca2 00 of 4 0.25Down
Adult carcass7 21 of 4 0.70None
Larval CNS48 34 of 4 4.67Up
Larval Salivary gland3 00 of 4 0.37Down
Larval midgut3 00 of 4 0.30Down
Larval tubule4 00 of 4 0.40Down
Larval hindgut3 10 of 4 0.30Down
Larval fat body4 00 of 4 0.50Down
Larval trachea2 20 of 4 0.28Down
Larval carcass2 00 of 4 0.24Down
S2 cells (growing)1 00 of 4 0.11Down
Whole fly10 04 of 4

Looking for FBgn0044328. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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