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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044419 through 18771 annotations produced 1 hits



Peptidoglycan recognition protein LD /// Pmi (PGRP-LD /// Pmi):

Annotation Number : CG32912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044419 /// FBgn0260458
Gbrowse : chr3L:5773144-5777785 (+) // 100.0 //
Probeset : 1629385_s_at
Accessions : protein= NP_001027109; /// NP_001027110; /// NP_001027111; /// NP_001027112; /// NP_001027113; /// NP_001137893;, nucleotide= NM_001031938; /// NM_001031939; /// NM_001031940; /// NM_001031941; /// NM_001031942; /// NM_001144421;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0044419 /// FBgn0260458.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 3.00Up
Head16 ± 24 of 4 2.00Up
Eye12 ± 14 of 4 1.43None
Thoracicoabdominal ganglion45 ± 24 of 4 5.40Up
Salivary gland26 ± 10 of 4 3.14Up
Crop22 ± 14 of 4 2.70Up
Midgut12 ± 11 of 4 1.50None
Tubule141 ± 104 of 416.70Up
Hindgut32 ± 24 of 4 3.90Up
Heart14 ± 24 of 4 1.74None
Fat body16 ± 12 of 4 1.96Up
Ovary8 ± 02 of 4 1.10None
Testis9 ± 04 of 4 1.10None
Male accessory glands5 ± 10 of 4 0.60None
Virgin spermatheca37 ± 24 of 4 4.40Up
Mated spermatheca24 ± 14 of 4 2.93Up
Adult carcass21 ± 24 of 4 2.50Up
Larval CNS23 ± 24 of 4 2.78Up
Larval Salivary gland5 ± 10 of 4 0.69None
Larval midgut20 ± 14 of 4 2.36Up
Larval tubule75 ± 34 of 4 9.00Up
Larval hindgut22 ± 14 of 4 2.69Up
Larval fat body21 ± 32 of 4 2.50Up
Larval trachea24 ± 64 of 4 2.95Up
Larval carcass10 ± 11 of 4 1.23None
S2 cells (growing)70 ± 14 of 4 8.28Up
Whole fly8 ± 12 of 4

Looking for FBgn0044419. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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