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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044452 through 18771 annotations produced 1 hits



Autophagy-specific gene 2 (Atg2):

Annotation Number : CG1241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044452
Gbrowse : chr3L:2774378-2780688 (+) // 100.0 //
Probeset : 1632297_at
Accessions : protein= NP_647748;, nucleotide= NM_139491;
FlyMine data for FBgn0044452.
TRiP has 2 RNAi stocks for FBgn0044452 available for purchase.
VDRC has 1 RNAi stocks for FBgn0044452 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 34 of 4 1.10Up
Head195 ± 64 of 4 1.50Up
Eye126 ± 84 of 4 0.97None
Thoracicoabdominal ganglion159 ± 44 of 4 1.20Up
Salivary gland323 ± 214 of 4 2.48Up
Crop252 ± 44 of 4 1.90Up
Midgut156 ± 54 of 4 1.20Up
Tubule251 ± 94 of 4 1.90Up
Hindgut177 ± 74 of 4 1.40Up
Heart305 ± 174 of 4 2.35Up
Fat body590 ± 354 of 4 4.53Up
Ovary170 ± 94 of 4 1.30Up
Testis97 ± 34 of 4 0.70Down
Male accessory glands255 ± 44 of 4 2.00Up
Virgin spermatheca857 ± 284 of 4 6.58Up
Mated spermatheca604 ± 144 of 4 4.64Up
Adult carcass336 ± 214 of 4 2.60Up
Larval CNS128 ± 104 of 4 0.99None
Larval Salivary gland167 ± 74 of 4 1.29Up
Larval midgut308 ± 354 of 4 2.37Up
Larval tubule377 ± 134 of 4 2.90Up
Larval hindgut238 ± 214 of 4 1.83Up
Larval fat body268 ± 284 of 4 2.10Up
Larval trachea136 ± 174 of 4 1.05None
Larval carcass221 ± 334 of 4 1.70None
S2 cells (growing)141 ± 44 of 4 1.08None
Whole fly130 ± 34 of 4

Looking for FBgn0044452. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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