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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044510 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S5 (mRpS5):

Annotation Number : CG40049
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044510 /// FBgn0085810
Gbrowse : chr3L:24530463-24543449 (+) // 100.0 //
Probeset : 1624324_a_at
Accessions : protein= NP_001036651; /// NP_001036652; /// NP_001036653;, nucleotide= NM_001043186; /// NM_001043187; /// NM_001043188;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0044510 /// FBgn0085810.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1399 ± 304 of 4 2.10Up
Head877 ± 464 of 4 1.30Up
Eye767 ± 234 of 4 1.17Up
Thoracicoabdominal ganglion1604 ± 444 of 4 2.50Up
Salivary gland954 ± 394 of 4 1.46Up
Crop692 ± 134 of 4 1.10None
Midgut731 ± 94 of 4 1.10Up
Tubule934 ± 184 of 4 1.40Up
Hindgut923 ± 214 of 4 1.40Up
Heart700 ± 164 of 4 1.07None
Fat body676 ± 684 of 4 1.03None
Ovary868 ± 264 of 4 1.30Up
Testis218 ± 54 of 4 0.30Down
Male accessory glands431 ± 144 of 4 0.70Down
Virgin spermatheca513 ± 174 of 4 0.78Down
Mated spermatheca561 ± 94 of 4 0.86Down
Adult carcass929 ± 74 of 4 1.40Up
Larval CNS738 ± 244 of 4 1.13Up
Larval Salivary gland306 ± 84 of 4 0.47Down
Larval midgut548 ± 184 of 4 0.84Down
Larval tubule472 ± 54 of 4 0.70Down
Larval hindgut809 ± 244 of 4 1.24Up
Larval fat body435 ± 154 of 4 0.70Down
Larval trachea432 ± 184 of 4 0.66Down
Larval carcass624 ± 154 of 4 0.95None
S2 cells (growing)498 ± 54 of 4 0.76Down
Whole fly654 ± 214 of 4

Looking for FBgn0044510. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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