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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044511 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S21 (mRpS21):

Annotation Number : CG32854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044511
Gbrowse : chr3R:9207050-9207514 (-) // 100.0 //
Probeset : 1631434_at
Accessions : protein= NP_731803;, nucleotide= NM_169518;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0044511.
VDRC has 3 RNAi stocks for FBgn0044511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain435 74 of 4 0.90None
Head537 234 of 4 1.10None
Eye534 284 of 4 1.06None
Thoracicoabdominal ganglion522 214 of 4 1.00None
Salivary gland521 164 of 4 1.03None
Crop402 134 of 4 0.80None
Midgut410 174 of 4 0.80None
Tubule235 74 of 4 0.50Down
Hindgut467 134 of 4 0.90None
Heart460 164 of 4 0.91None
Fat body499 404 of 4 0.99None
Ovary644 114 of 4 1.30None
Testis335 74 of 4 0.70None
Male accessory glands599 224 of 4 1.20None
Virgin spermatheca445 224 of 4 0.88None
Mated spermatheca494 484 of 4 0.98None
Adult carcass427 324 of 4 0.80None
Larval CNS552 134 of 4 1.09None
Larval Salivary gland539 164 of 4 1.07None
Larval midgut245 24 of 4 0.49Down
Larval tubule270 104 of 4 0.50Down
Larval hindgut386 214 of 4 0.76None
Larval fat body238 114 of 4 0.50Down
Larval trachea476 374 of 4 0.94None
Larval carcass416 434 of 4 0.82None
S2 cells (growing)356 84 of 4 0.70None
Whole fly505 564 of 4

Looking for FBgn0044511. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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