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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0044826 through 18771 annotations produced 1 hits



Pak3 (Pak3):

Annotation Number : CG14895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044826
Gbrowse : chr3R:12272467-12279550 (-) // 100.0 //
Probeset : 1628149_a_at
Accessions : protein= NP_650545; /// NP_732141;, nucleotide= NM_142288; /// NM_169719;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0044826.
Homophila reports that CG14895 is a close match (9e-11) to human gene CAPB;DRT;EPHB2;EPHT3;ERK;PCBC (NP_059145), a gene associated with Prostate cancer, progression and metastasis of, 603688 (3).
BioGrid reports that CG14895 interacts with CG7379 CG9511 .
TRiP has 1 RNAi stocks for FBgn0044826 available for purchase.
VDRC has 4 RNAi stocks for FBgn0044826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 94 of 4 1.40Up
Head126 ± 44 of 4 0.70Down
Eye133 ± 104 of 4 0.77Down
Thoracicoabdominal ganglion226 ± 34 of 4 1.30Up
Salivary gland159 ± 294 of 4 0.92None
Crop231 ± 84 of 4 1.30Up
Midgut561 ± 74 of 4 3.20Up
Tubule436 ± 224 of 4 2.50Up
Hindgut267 ± 104 of 4 1.50Up
Heart237 ± 234 of 4 1.37None
Fat body139 ± 364 of 4 0.80None
Ovary312 ± 34 of 4 1.80Up
Testis105 ± 34 of 4 0.60Down
Male accessory glands284 ± 104 of 4 1.60Up
Virgin spermatheca162 ± 144 of 4 0.93None
Mated spermatheca177 ± 204 of 4 1.02None
Adult carcass101 ± 174 of 4 0.60Down
Larval CNS279 ± 394 of 4 1.61Up
Larval Salivary gland262 ± 254 of 4 1.51Up
Larval midgut665 ± 184 of 4 3.83Up
Larval tubule395 ± 124 of 4 2.30Up
Larval hindgut361 ± 94 of 4 2.08Up
Larval fat body157 ± 94 of 4 0.90None
Larval trachea338 ± 234 of 4 1.95Up
Larval carcass147 ± 24 of 4 0.85Down
S2 cells (growing)269 ± 114 of 4 1.55Up
Whole fly173 ± 64 of 4

Looking for FBgn0044826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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