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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0045035 through 18771 annotations produced 1 hits



telomere fusion (tefu):

Annotation Number : CG6535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045035
Gbrowse : chr3R:11058010-11067865 (-) // 100.0 //
Probeset : 1630729_at
Accessions : protein= NP_001036712;, nucleotide= NM_001043247;
Pathway : "0000781 // chromosome
Interpro : telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0
FlyMine data for FBgn0045035.
Homophila reports that CG6535 is a close match (9e-53) to human gene ATR;FRP1;SCKL (NP_001175), a gene associated with Seckel syndrome 1, 210600 (3).
TRiP has 2 RNAi stocks for FBgn0045035 available for purchase.
VDRC has 2 RNAi stocks for FBgn0045035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 0.80None
Head19 04 of 4 0.50Down
Eye32 34 of 4 0.84None
Thoracicoabdominal ganglion37 04 of 4 1.00None
Salivary gland118 114 of 4 3.09Up
Crop52 34 of 4 1.40Up
Midgut19 22 of 4 0.50Down
Tubule30 14 of 4 0.80Down
Hindgut42 24 of 4 1.10None
Heart26 14 of 4 0.69Down
Fat body29 54 of 4 0.76None
Ovary89 24 of 4 2.30Up
Testis75 24 of 4 2.00Up
Male accessory glands347 634 of 4 9.10Up
Virgin spermatheca26 14 of 4 0.69Down
Mated spermatheca30 24 of 4 0.81None
Adult carcass30 34 of 4 0.80None
Larval CNS111 64 of 4 2.93Up
Larval Salivary gland132 34 of 4 3.48Up
Larval midgut19 34 of 4 0.52Down
Larval tubule31 44 of 4 0.80None
Larval hindgut48 24 of 4 1.27Up
Larval fat body22 31 of 4 0.60Down
Larval trachea61 24 of 4 1.61Up
Larval carcass31 24 of 4 0.83None
S2 cells (growing)239 84 of 4 6.29Up
Whole fly38 34 of 4

Looking for FBgn0045035. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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