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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0045073 through 18771 annotations produced 1 hits



Drosophila Stromal interaction molecule (Stim):

Annotation Number : CG9126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045073
Gbrowse : chrX:15828932-15834468 (-) // 100.0 //
Probeset : 1623873_at
Accessions : protein= NP_523357; /// NP_996470; /// NP_996471;, nucleotide= NM_078633; /// NM_206747; /// NM_206748;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic
Interpro : 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electro
FlyMine data for FBgn0045073.
BDGP gene expression has embryonic in situ data for Stim: 13 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0045073 available for purchase.
VDRC has 3 RNAi stocks for FBgn0045073 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 34 of 4 0.70Down
Head389 104 of 4 1.00None
Eye441 74 of 4 1.15Up
Thoracicoabdominal ganglion326 54 of 4 0.90Down
Salivary gland1016 364 of 4 2.66Up
Crop837 314 of 4 2.20Up
Midgut375 44 of 4 1.00None
Tubule1399 634 of 4 3.70Up
Hindgut556 34 of 4 1.50Up
Heart538 84 of 4 1.41Up
Fat body521 274 of 4 1.36Up
Ovary573 54 of 4 1.50Up
Testis281 54 of 4 0.70Down
Male accessory glands743 164 of 4 1.90Up
Virgin spermatheca1063 324 of 4 2.78Up
Mated spermatheca1124 424 of 4 2.94Up
Adult carcass423 154 of 4 1.10None
Larval CNS224 144 of 4 0.59Down
Larval Salivary gland487 124 of 4 1.27Up
Larval midgut440 234 of 4 1.15None
Larval tubule755 214 of 4 2.00Up
Larval hindgut503 324 of 4 1.32Up
Larval fat body402 274 of 4 1.10None
Larval trachea410 184 of 4 1.07None
Larval carcass294 224 of 4 0.77Down
S2 cells (growing)603 54 of 4 1.58Up
Whole fly382 124 of 4

Looking for FBgn0045073. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime