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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0045495 through 18771 annotations produced 1 hits



Gustatory receptor 28b (Gr28b):

Annotation Number : CG13788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045495
Gbrowse : chr2L:7455007-7462247 (-) // 100.0 //
Probeset : 1638594_at
Accessions : protein= NP_647614; /// NP_995640; /// NP_995641; /// NP_995642; /// NP_995643;, nucleotide= NM_139357; /// NM_205918; /// NM_205919; /// NM_205920; /// NM_205921;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0045495.
BioGrid reports that CG13788 interacts with CG9871 .
VDRC has 2 RNAi stocks for FBgn0045495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 3.30Up
Head11 04 of 4 2.60Up
Eye4 00 of 4 1.06None
Thoracicoabdominal ganglion51 34 of 412.10Up
Salivary gland17 42 of 4 4.16Up
Crop4 00 of 4 1.10None
Midgut2 10 of 4 0.70None
Tubule4 00 of 4 1.10None
Hindgut6 10 of 4 1.50None
Heart5 00 of 4 1.20None
Fat body7 40 of 4 1.86None
Ovary2 00 of 4 0.50None
Testis3 01 of 4 0.70None
Male accessory glands9 21 of 4 2.10None
Virgin spermatheca2 00 of 4 0.58None
Mated spermatheca2 11 of 4 0.68None
Adult carcass10 21 of 4 2.50None
Larval CNS11 34 of 4 2.64Up
Larval Salivary gland7 10 of 4 1.74None
Larval midgut11 10 of 4 2.75Up
Larval tubule6 12 of 4 1.40None
Larval hindgut5 00 of 4 1.18None
Larval fat body6 11 of 4 1.60None
Larval trachea4 00 of 4 1.04None
Larval carcass8 12 of 4 1.99None
S2 cells (growing)3 01 of 4 0.88None
Whole fly4 11 of 4

Looking for FBgn0045495. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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