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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0045761 through 18771 annotations produced 1 hits



CHKov1 (CHKov1):

Annotation Number : CG10618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045761
Gbrowse : chr3R:21149026-21150108 (-) // 100.0 //
Probeset : 1624272_at
Accessions : protein= NP_001097916; /// NP_001097917; /// NP_001097918; /// NP_001097919; /// NP_651386;, nucleotide= NM_001104446; /// NM_001104447; /// NM_001104448; /// NM_001104449; /// NM_143129;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0045761.
VDRC has 1 RNAi stocks for FBgn0045761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 44 of 4 1.30None
Head121 124 of 4 1.90Up
Eye162 64 of 4 2.56Up
Thoracicoabdominal ganglion130 54 of 4 2.10Up
Salivary gland790 424 of 412.42Up
Crop323 94 of 4 5.10Up
Midgut147 64 of 4 2.30Up
Tubule156 164 of 4 2.50Up
Hindgut162 64 of 4 2.50Up
Heart175 114 of 4 2.76Up
Fat body204 274 of 4 3.20Up
Ovary3 10 of 4 0.00Down
Testis32 34 of 4 0.50Down
Male accessory glands332 114 of 4 5.20Up
Virgin spermatheca158 64 of 4 2.48Up
Mated spermatheca157 114 of 4 2.47Up
Adult carcass224 204 of 4 3.50Up
Larval CNS57 34 of 4 0.90None
Larval Salivary gland332 124 of 4 5.23Up
Larval midgut188 144 of 4 2.97Up
Larval tubule238 84 of 4 3.70Up
Larval hindgut205 114 of 4 3.22Up
Larval fat body289 194 of 4 4.50Up
Larval trachea377 424 of 4 5.93Up
Larval carcass250 164 of 4 3.93Up
S2 cells (growing)534 164 of 4 8.39Up
Whole fly63 64 of 4

Looking for FBgn0045761. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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