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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0045770 through 18771 annotations produced 1 hits


(CG32063):

Annotation Number : CG32063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045770
Gbrowse : chr3L:10458286-10461580 (+) // 100.0 //
Probeset : 1635424_s_at
Accessions : protein= NP_648394; /// NP_729612;, nucleotide= NM_140137; /// NM_168410;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0045770.
VDRC has 2 RNAi stocks for FBgn0045770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.02Down
Crop5 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule7 ± 00 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body7 ± 41 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis3129 ± 1354 of 4 6.10Up
Male accessory glands8 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca6 ± 10 of 4 0.01Down
Adult carcass17 ± 52 of 4 0.00Down
Larval CNS4 ± 10 of 4 0.01Down
Larval Salivary gland3 ± 00 of 4 0.01Down
Larval midgut6 ± 21 of 4 0.01Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body619 ± 3444 of 4 1.20None
Larval trachea20 ± 272 of 4 0.04Down
Larval carcass8 ± 21 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly516 ± 134 of 4

Looking for FBgn0045770. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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