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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0045842 through 18771 annotations produced 2 hits



yuri gagarin (yuri):

Annotation Number : CG31732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045842
Gbrowse : chr2L:15261205-15264690 (-) // 100.0 //
Probeset : 1638821_a_at
Accessions : protein= NP_001033909; /// NP_001033910; /// NP_001033911; /// NP_001033912; /// NP_001162983; /// NP_001162984; /// NP_723903; /// NP_723904; /// NP_723906;, nucleotide= NM_001038820; /// NM_001038821; /// NM_001038822; /// NM_001038823; /// NM_001169512; /// NM_001169513; /// NM_165106; /// NM_165107; /// NM_165109;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0070865 // investment cone // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0045842.
BioGrid reports that CG31732 interacts with CG32169 CG8597 .
VDRC has 5 RNAi stocks for FBgn0045842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 4 0.20Down
Head103 94 of 4 1.30None
Eye89 54 of 4 1.12None
Thoracicoabdominal ganglion13 24 of 4 0.20Down
Salivary gland151 44 of 4 1.89Up
Crop278 144 of 4 3.50Up
Midgut76 44 of 4 1.00None
Tubule160 204 of 4 2.00Up
Hindgut104 24 of 4 1.30Up
Heart307 174 of 4 3.83Up
Fat body407 824 of 4 5.08Up
Ovary35 14 of 4 0.40Down
Testis84 34 of 4 1.00None
Male accessory glands82 54 of 4 1.00None
Virgin spermatheca394 254 of 4 4.93Up
Mated spermatheca336 104 of 4 4.20Up
Adult carcass182 34 of 4 2.30Up
Larval CNS28 74 of 4 0.35Down
Larval Salivary gland160 74 of 4 2.00Up
Larval midgut77 24 of 4 0.97None
Larval tubule49 14 of 4 0.60Down
Larval hindgut310 224 of 4 3.88Up
Larval fat body364 314 of 4 4.50Up
Larval trachea82 74 of 4 1.03None
Larval carcass89 34 of 4 1.11None
S2 cells (growing)226 84 of 4 2.83Up
Whole fly80 64 of 4



yuri gagarin (yuri):

Annotation Number : CG31732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045842
Gbrowse : chr2L:15257336-15264690 (-) // 100.0 //
Probeset : 1636288_at
Accessions : protein= NP_001033909; /// NP_001033910; /// NP_001033911; /// NP_001033912; /// NP_001162983; /// NP_001162984; /// NP_723903; /// NP_723904; /// NP_723906;, nucleotide= NM_001038820; /// NM_001038821; /// NM_001038822; /// NM_001038823; /// NM_001169512; /// NM_001169513; /// NM_165106; /// NM_165107; /// NM_165109;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0070865 // investment cone // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0045842.
BioGrid reports that CG31732 interacts with CG32169 CG8597 .
VDRC has 5 RNAi stocks for FBgn0045842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 0.30None
Head2 00 of 4 0.10Down
Eye4 00 of 4 0.15Down
Thoracicoabdominal ganglion7 10 of 4 0.20Down
Salivary gland1 00 of 4 0.04Down
Crop2 10 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart5 10 of 4 0.19Down
Fat body2 10 of 4 0.09Down
Ovary0 00 of 4 0.00Down
Testis563 194 of 418.80Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.15Down
Mated spermatheca3 10 of 4 0.12Down
Adult carcass7 40 of 4 0.20Down
Larval CNS2 20 of 4 0.09Down
Larval Salivary gland5 10 of 4 0.20Down
Larval midgut0 00 of 4 0.03Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body42 242 of 4 1.40None
Larval trachea3 30 of 4 0.13Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)2 10 of 4 0.09Down
Whole fly29 74 of 4

Looking for FBgn0045842. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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