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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046113 through 18771 annotations produced 1 hits



glutamate receptor (GluRIIC):

Annotation Number : CG4226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046113
Gbrowse : chr2L:913479-917805 (+) // 100.0 //
Probeset : 1626739_s_at
Accessions : protein= NP_608557;, nucleotide= NM_134713;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0046113.
Homophila reports that CG4226 is a close match (5e-85) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0046113 available for purchase.
VDRC has 2 RNAi stocks for FBgn0046113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.30Down
Head26 ± 14 of 4 1.10None
Eye4 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.20Down
Salivary gland28 ± 62 of 4 1.17None
Crop273 ± 64 of 411.20Up
Midgut41 ± 44 of 4 1.70Up
Tubule13 ± 11 of 4 0.60Down
Hindgut109 ± 24 of 4 4.50Up
Heart281 ± 114 of 411.48Up
Fat body17 ± 43 of 4 0.69Down
Ovary5 ± 00 of 4 0.20Down
Testis38 ± 24 of 4 1.60Up
Male accessory glands123 ± 134 of 4 5.10Up
Virgin spermatheca22 ± 13 of 4 0.92None
Mated spermatheca28 ± 13 of 4 1.14None
Adult carcass59 ± 44 of 4 2.40Up
Larval CNS8 ± 20 of 4 0.33Down
Larval Salivary gland2 ± 10 of 4 0.12Down
Larval midgut12 ± 00 of 4 0.51Down
Larval tubule9 ± 20 of 4 0.40Down
Larval hindgut71 ± 34 of 4 2.93Up
Larval fat body10 ± 20 of 4 0.40Down
Larval trachea18 ± 123 of 4 0.77None
Larval carcass431 ± 184 of 417.61Up
S2 cells (growing)3 ± 10 of 4 0.15Down
Whole fly24 ± 14 of 4

Looking for FBgn0046113. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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